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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = CTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488097 (3 seq.)
>W141000040
AADL01001028
Unclassified
mine drainage metagenome Group III [AADL]
594
522
-
Gln
CTG
[ENA]
¡û
>ENV09002295
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
37068
37140
+
Gln
CTG
[ENA]
¡û
>WENV077048
AADL01001028
Acid Mine Drainage microbial communities from Richmond mine
594
519
-
Gln
CTG
[ENA]
Identical group No.490148 (2 seq.)
>ENV09002216
ACXJ01011269
Mine drainage metagenome Contig1
8942
8870
-
Gln
CTG
[ENA]
¡û
>ENV09002277
ACXK01000041
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3994
3919
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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