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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664258 (12 seq.)
>A171007762
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
178886
178814
-
Val
GAC
-
¡û
>A171007799
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
158117
158045
-
Val
GAC
-
¡û
>W141000098
AADL01001603
Unclassified
mine drainage metagenome Group III [AADL]
5356
5427
+
Val
GAC
[ENA]
¡û
>W141000111
AADL01001647
Unclassified
mine drainage metagenome Group III [AADL]
15680
15609
-
Val
GAC
[ENA]
¡û
>WENV181292512
OFHE01031356
[OFHE] soil metagenome; Clay
438
366
-
Val
GAC
[ENA]
¢þ
>WENV181295132
OFHI01000775
[OFHI] soil metagenome; Clay
854
782
-
Val
GAC
[ENA]
¢þ
>ENV09001968
ACXJ01002191
Mine drainage metagenome Contig1
912
984
+
Val
GAC
[ENA]
¡û
>ENV09002170
ACXJ01010686
Mine drainage metagenome Contig1
297
226
-
Val
GAC
[ENA]
¡û
>ENV09002231
ACXJ01011373
Mine drainage metagenome Contig1
4433
4360
-
Val
GAC
[ENA]
¡û
>ENV09002273
ACXK01000024
Thermoplasmatales archaeon A-plasma AplasmaContig10144
3416
3344
-
Val
GAC
[ENA]
¡û
>WENV077106
AADL01001603
Acid Mine Drainage microbial communities from Richmond mine
5356
5430
+
Val
GAC
[ENA]
>WENV077119
AADL01001647
Acid Mine Drainage microbial communities from Richmond mine
15680
15606
-
Val
GAC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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