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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = GGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115761 (5 seq.)
>WENV181291655
OFHC01000303
[OFHC] soil metagenome; Clay
518
434
-
Ser
GGA
[ENA]
¢þ
>WENV181292286
OFHE01000024
[OFHE] soil metagenome; Clay
4173
4089
-
Ser
GGA
[ENA]
¢þ
>WENV181295057
OFHI01000050
[OFHI] soil metagenome; Clay
1043
1127
+
Ser
GGA
[ENA]
¢þ
>WENV181295664
OFHJ01000117
[OFHJ] soil metagenome; Clay
26458
26542
+
Ser
GGA
[ENA]
¢þ
>ENV09002301
ACXK01000083
Thermoplasmatales archaeon A-plasma AplasmaContig10144
564
648
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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