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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488096 (4 seq.)
>W141000036
AADL01000852
Unclassified
mine drainage metagenome Group III [AADL]
839
764
-
Pro
GGG
[ENA]
¡û
>ENV09002040
ACXJ01007549
Mine drainage metagenome Contig1
1254
1179
-
Pro
GGG
[ENA]
¡û
>ENV09002302
ACXK01000087
Thermoplasmatales archaeon A-plasma AplasmaContig10144
950
875
-
Pro
GGG
[ENA]
¡û
>WENV077044
AADL01000852
Acid Mine Drainage microbial communities from Richmond mine
839
764
-
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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