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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.471003 (6 seq.)
>WENV180343214
OBLK01000245
[OBLK] soil metagenome; Clay
12227
12154
-
Asn
GTT
[ENA]
¢þ
>WENV181292305
OFHE01000118
[OFHE] soil metagenome; Clay
607
534
-
Asn
GTT
[ENA]
¢þ
>WENV181295048
OFHI01000031
[OFHI] soil metagenome; Clay
33341
33414
+
Asn
GTT
[ENA]
¢þ
>WENV181295720
OFHJ01000265
[OFHJ] soil metagenome; Clay
149
76
-
Asn
GTT
[ENA]
¢þ
>ENV09002275
ACXK01000041
Thermoplasmatales archaeon A-plasma AplasmaContig10144
6544
6619
+
Asn
GTT
[ENA]
¡û
>ENV09002297
ACXK01000072
Thermoplasmatales archaeon A-plasma AplasmaContig10144
33235
33161
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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