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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon A-plasma AplasmaContig10144
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664232 (17 seq.)
>WENV180343457
OBLK01019895
[OBLK] soil metagenome; Clay
358
430
+
Ala
TGC
[ENA]
¢þ
>WENV181292289
OFHE01000029
[OFHE] soil metagenome; Clay
476
405
-
Ala
TGC
[ENA]
¢þ
>WENV181292342
OFHE01000937
[OFHE] soil metagenome; Clay
1239
1167
-
Ala
TGC
[ENA]
¢þ
>WENV181295030
OFHI01000009
[OFHI] soil metagenome; Clay
38559
38631
+
Ala
TGC
[ENA]
¢þ
>WENV181295068
OFHI01000075
[OFHI] soil metagenome; Clay
22740
22811
+
Ala
TGC
[ENA]
¢þ
>WENV181295180
OFHI01002347
[OFHI] soil metagenome; Clay
54
125
+
Ala
TGC
[ENA]
¢þ
>WENV181295691
OFHJ01000182
[OFHJ] soil metagenome; Clay
26101
26172
+
Ala
TGC
[ENA]
¢þ
>WENV181296255
OFHJ01018210
[OFHJ] soil metagenome; Clay
1426
1354
-
Ala
TGC
[ENA]
¢þ
>WENV181296427
OFHJ01035334
[OFHJ] soil metagenome; Clay
879
808
-
Ala
TGC
[ENA]
¢þ
>WENV170013438
AUZX01006300
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
265
194
-
Ala
TGC
[ENA]
¢þ
>ENV09002044
ACXJ01007839
Mine drainage metagenome Contig1
503
575
+
Ala
TGC
[ENA]
¡û
>ENV09002113
ACXJ01009930
Mine drainage metagenome Contig1
3426
3355
-
Ala
TGC
[ENA]
¡û
>ENV09002184
ACXJ01010952
Mine drainage metagenome Contig1
8369
8298
-
Ala
TGC
[ENA]
¡û
>ENV09002222
ACXJ01011298
Mine drainage metagenome Contig1
10476
10547
+
Ala
TGC
[ENA]
¡û
>ENV09002245
ACXJ01011423
Mine drainage metagenome Contig1
334
263
-
Ala
TGC
[ENA]
¡û
>ENV09002270
ACXJ01012575
Mine drainage metagenome Contig1
1534
1463
-
Ala
TGC
[ENA]
¡û
>ENV09002286
ACXK01000058
Thermoplasmatales archaeon A-plasma AplasmaContig10144
510
439
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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