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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon E-plasma EplasmaContig2057
Anticodon = CAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245174 (7 seq.)
>A171007750
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1458879
1458805
-
Met
CAT
-
¡û
>A171007787
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1453056
1452982
-
Met
CAT
-
¡û
>W141000100
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
439
365
-
Met
CAT
[ENA]
¡û
>WENV170013420
AUZX01003852
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
66
140
+
Met
CAT
[ENA]
¢þ
>ENV09002207
ACXJ01011195
Mine drainage metagenome Contig1
9373
9299
-
Met
CAT
[ENA]
¡û
>ENV09002328
ACXL01000016
Thermoplasmatales archaeon E-plasma EplasmaContig2057
39363
39289
-
Met
CAT
[ENA]
¡û
>WENV077107
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
439
362
-
Met
CAT
[ENA]
Identical group No.333235 (2 seq.)
>WENV170013617
AUZY01005632
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
239
164
-
Met
CAT
[ENA]
¢þ
>ENV09002322
ACXL01000013
Thermoplasmatales archaeon E-plasma EplasmaContig2057
2554
2481
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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