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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon E-plasma EplasmaContig2057
Anticodon = GAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488104 (26 seq.)
>A171003624
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
938373
938445
+
Phe
GAA
-
¡û
>A171006628
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1798418
1798490
+
Phe
GAA
-
¡û
>A171007761
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
279047
278975
-
Phe
GAA
-
¡û
>A171007798
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
261764
261692
-
Phe
GAA
-
¡û
>W141000060
AADL01001298
Unclassified
mine drainage metagenome Group III [AADL]
893
965
+
Phe
GAA
[ENA]
¡û
>W141000096
AADL01001573
Unclassified
mine drainage metagenome Group III [AADL]
9947
9875
-
Phe
GAA
[ENA]
¡û
>W141000110
AADL01001643
Unclassified
mine drainage metagenome Group III [AADL]
3432
3504
+
Phe
GAA
[ENA]
¡û
>W141000152
AADL01002191
Unclassified
mine drainage metagenome Group III [AADL]
297
369
+
Phe
GAA
[ENA]
¡û
>WENV170013460
AUZX01008961
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
248
176
-
Phe
GAA
[ENA]
¢þ
>At1756
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
490564
490492
-
Phe
GAA
[Ensembl]
¡û
>W1910469086
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
481679
481751
+
Phe
GAA
[ENA]
¡û
>W1910585091
JYHS01000003
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
224436
224364
-
Phe
GAA
[ENA]
¡û
>ENV09002000
ACXJ01005576
Mine drainage metagenome Contig1
298
370
+
Phe
GAA
[ENA]
¡û
>ENV09002138
ACXJ01010336
Mine drainage metagenome Contig1
3148
3076
-
Phe
GAA
[ENA]
¡û
>ENV09002152
ACXJ01010552
Mine drainage metagenome Contig1
1404
1332
-
Phe
GAA
[ENA]
¡û
>ENV09002229
ACXJ01011367
Mine drainage metagenome Contig1
3220
3292
+
Phe
GAA
[ENA]
¡û
>ENV09002314
ACXL01000009
Thermoplasmatales archaeon E-plasma EplasmaContig2057
78818
78746
-
Phe
GAA
[ENA]
¡û
>W1610000068
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
65439
65511
+
Phe
GAA
[ENA]
¡û
>W1610047589
BBDK01000010
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
6254
6182
-
Phe
GAA
[ENA]
¡û
>W1610642306
LJCQ01000236
Unclassified
Acidiplasma aeolicum V [LJCQ]
4201
4273
+
Phe
GAA
[ENA]
¡û
>W1610670462
LKBG01000112
Unclassified
Acidiplasma aeolicum VT [LKBG]
479
407
-
Phe
GAA
[ENA]
¡û
>W1610670507
LKBH01000203
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
779
707
-
Phe
GAA
[ENA]
¡û
>WENV077068
AADL01001298
Acid Mine Drainage microbial communities from Richmond mine
893
968
+
Phe
GAA
[ENA]
>WENV077105
AADL01001573
Acid Mine Drainage microbial communities from Richmond mine
9947
9872
-
Phe
GAA
[ENA]
>WENV077118
AADL01001643
Acid Mine Drainage microbial communities from Richmond mine
3432
3507
+
Phe
GAA
[ENA]
>WENV077160
AADL01002191
Acid Mine Drainage microbial communities from Richmond mine
297
372
+
Phe
GAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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