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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon E-plasma EplasmaContig2057
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488106 (10 seq.)
>A171003628
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1684877
1684950
+
Asp
GTC
-
¡û
>A171006616
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
635108
635181
+
Asp
GTC
-
¡û
>W141000071
AADL01001490
Unclassified
mine drainage metagenome Group III [AADL]
3824
3749
-
Asp
GTC
[ENA]
¡û
>W141000072
AADL01001491
Unclassified
mine drainage metagenome Group III [AADL]
211
137
-
Asp
GTC
[ENA]
¡û
>W141000147
AADL01002079
Unclassified
mine drainage metagenome Group III [AADL]
1141
1215
+
Asp
GTC
[ENA]
¡û
>ENV09002309
ACXL01000008
Thermoplasmatales archaeon E-plasma EplasmaContig2057
156425
156350
-
Asp
GTC
[ENA]
¡û
>W1610000076
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
340759
340832
+
Asp
GTC
[ENA]
¡û
>WENV077079
AADL01001490
Acid Mine Drainage microbial communities from Richmond mine
3824
3747
-
Asp
GTC
[ENA]
>WENV077080
AADL01001491
Acid Mine Drainage microbial communities from Richmond mine
211
134
-
Asp
GTC
[ENA]
>WENV077155
AADL01002079
Acid Mine Drainage microbial communities from Richmond mine
1141
1218
+
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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