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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon I-plasma
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.255344 (4 seq.)
>WENV181406606
OGCG01000636
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
20517
20594
+
Pro
GGG
[ENA]
¢þ
>WENV181407339
OGCG01018020
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1
75
+
Pro
GGG
[ENA]
¢þ
>WENV181407412
OGCG01024038
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1275
1201
-
Pro
GGG
[ENA]
¢þ
>ENV09002360
ACXM01000006
Thermoplasmatales archaeon I-plasma
215733
215808
+
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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