This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatales archaeon I-plasma
Anticodon = TCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.556686 (5 seq.)
>WENV181406579
OGCG01000548
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
157
231
+
Gly
TCC
[ENA]
¢þ
>WENV181406783
OGCG01001395
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
11876
11804
-
Gly
TCC
[ENA]
¢þ
>WENV181406938
OGCG01002896
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
74
2
-
Gly
TCC
[ENA]
¢þ
>ENV09002333
ACXM01000001
Thermoplasmatales archaeon I-plasma
114823
114898
+
Gly
TCC
[ENA]
¡û
>W1610018741
AQVK01000017
Euryarchaeota
euryarchaeote SCGC AAA261-E04 [AQVK]
5750
5825
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK