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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = TGT
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241265 (4 seq.)
>A178000260
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
1188483
1188393
-
Thr
TGT
-
¡û
>A178000271
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
1188489
1188399
-
Thr
TGT
-
¡û
>A178000409
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
1155493
1155403
-
Thr
TGT
-
¡û
>At0462
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
1188479
1188389
-
Thr
TGT
[Ensembl]
¡û
Identical group No.241818 (15 seq.)
>A178000033
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1301209
1301298
+
Thr
TGT
-
¡û
>A178000043
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1231699
1231788
+
Thr
TGT
-
¡û
>A178000053
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1311833
1311922
+
Thr
TGT
-
¡û
>A178000063
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1212471
1212560
+
Thr
TGT
-
¡û
>A178000073
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1207380
1207469
+
Thr
TGT
-
¡û
>A178000090
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1364268
1364179
-
Thr
TGT
-
¡û
>A178000111
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1695784
1695695
-
Thr
TGT
-
¡û
>A178000187
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1112973
1113062
+
Thr
TGT
-
¡û
>A178000197
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1248578
1248667
+
Thr
TGT
-
¡û
>A178000352
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1105124
1105213
+
Thr
TGT
-
¡û
>A178000532
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1753966
1753877
-
Thr
TGT
-
¡û
>A178000542
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1753967
1753878
-
Thr
TGT
-
¡û
>A178000552
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1753984
1753895
-
Thr
TGT
-
¡û
>A178000749
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
809206
809117
-
Thr
TGT
-
¡û
>At0509
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
789766
789677
-
Thr
TGT
[Ensembl]
¡û
Identical group No.242113 (1 seq.)
>At0530
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
1201508
1201599
+
Thr
TGT
[Ensembl]
¡û
Identical group No.244892 (7 seq.)
>A178000242
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
522824
522735
-
Thr
TGT
-
¡û
>A178000574
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
1598641
1598729
+
Thr
TGT
-
¡û
>A178000591
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
1598637
1598725
+
Thr
TGT
-
¡û
>A178000608
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
1598639
1598727
+
Thr
TGT
-
¡û
>A178000625
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
1598641
1598729
+
Thr
TGT
-
¡û
>A178000642
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
1598641
1598729
+
Thr
TGT
-
¡û
>At0157
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
1598625
1598713
+
Thr
TGT
[Ensembl]
¡û
Identical group No.245508 (3 seq.)
>At0196
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1239015
1239132
+
Thr
TGT
[Ensembl]
¡û
>At0272
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1693504
1693410
-
Thr
TGT
[Ensembl]
¡û
>At0347
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
1691338
1691446
+
Thr
TGT
[Ensembl]
¡û
Identical group No.245524 (1 seq.)
>At0318
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
987244
987115
-
Thr
TGT
[Ensembl]
¡û
Identical group No.248083 (2 seq.)
>A178000383
CP006646
Thermoproteota
Thermofilum adornatum 1910b [CP006646]
420488
420384
-
Thr
TGT
-
¡û
>A178000428
CP007493
Thermoproteota
Thermofilum adornatum 1505 [CP007493]
1370301
1370197
-
Thr
TGT
-
¡û
Identical group No.262402 (2 seq.)
>A178000678
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
416578
416486
-
Thr
TGT
-
¡û
>A177000065
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
416578
416486
-
Thr
TGT
-
¡û
Identical group No.288179 (3 seq.)
>A178000146
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
352666
352794
+
Thr
TGT
-
¡û
>WENV181229495
OFEJ01021162
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
838
762
-
Thr
TGT
[ENA]
¢þ
>At0405
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
427592
427465
-
Thr
TGT
[Ensembl]
¡û
Identical group No.301863 (1 seq.)
>A171001660
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1320425
1320501
+
Thr
TGT
-
¡û
Identical group No.301926 (4 seq.)
>A178000023
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
822474
822576
+
Thr
TGT
-
¡û
>A178000128
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
673525
673426
-
Thr
TGT
-
¡û
>A178000176
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
893626
893727
+
Thr
TGT
-
¡û
>A178000323
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
915236
915134
-
Thr
TGT
-
¡û
Identical group No.349710 (1 seq.)
>A179000690
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
2116375
2116288
-
Thr
TGT
-
¡û
Identical group No.372657 (1 seq.)
>A178000509
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
10385
10283
-
Thr
TGT
-
¡û
Identical group No.391923 (1 seq.)
>A179000388
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
631039
630941
-
Thr
TGT
-
¡û
Identical group No.554273 (1 seq.)
>At0022
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
295325
295231
-
Thr
TGT
[Ensembl]
¡û
Identical group No.563659 (1 seq.)
>A178000274
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
262509
262616
+
Thr
TGT
-
¡û
Identical group No.585680 (3 seq.)
>A171006444
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
596669
596594
-
Thr
TGT
-
¡û
>W1910870019
NCQP01000007
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
258905
258830
-
Thr
TGT
[ENA]
¡û
>W1610772513
LNTB01000001
Thermoproteota
Pyrodictium occultum PL-19 [LNTB]
546382
546307
-
Thr
TGT
[ENA]
¡û
Identical group No.594133 (1 seq.)
>A17A001697
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
725282
725181
-
Thr
TGT
-
¡û
Identical group No.594135 (1 seq.)
>A178000221
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
1183688
1183775
+
Thr
TGT
-
¡û
Identical group No.597272 (1 seq.)
>At2238
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
389420
389316
-
Thr
TGT
[Ensembl]
¡û
Identical group No.597310 (1 seq.)
>At0589
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
257851
257751
-
Thr
TGT
[Ensembl]
¡û
Identical group No.603282 (1 seq.)
>A178000396
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
1394441
1394342
-
Thr
TGT
-
¡û
Identical group No.752753 (1 seq.)
>At0123
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
48304
48230
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK