This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49571 (2 seq.)
>ENV08000841
ABMJ01128539
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
15
103
+
Ser
GCT
[ENA]
¡û
>SRA1000785
SRR001047.59810
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
15
103
+
Ser
GCT
[SRA]
Identical group No.90507 (2 seq.)
>ENV08000794
ABMJ01029328
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
6
93
+
Ser
GCT
[ENA]
¡û
>SRA1000827
SRR001047.187206
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
6
93
+
Ser
GCT
[SRA]
Identical group No.90509 (2 seq.)
>ENV08000819
ABMJ01059287
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
19
106
+
Ser
GCT
[ENA]
¡û
>SRA1000860
SRR001047.305230
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
19
106
+
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK