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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
Anticodon = TTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158661 (2 seq.)
>ENV08000835
ABMJ01112153
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
89
12
-
Lys
TTT
[ENA]
¡û
>SRA1000802
SRR001047.100423
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
89
12
-
Lys
TTT
[SRA]
Identical group No.196019 (2 seq.)
>ENV08000786
ABMJ01003849
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
24
100
+
Lys
TTT
[ENA]
¡û
>SRA1000801
SRR001047.98959
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
24
100
+
Lys
TTT
[SRA]
Identical group No.302550 (2 seq.)
>ENV08000847
ABMJ01176559
freshwater metagenome; viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
26
98
+
Lys
TTT
[ENA]
¡û
>SRA1000849
SRR001047.272727
Tilapia Farm, viral fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000139)
26
98
+
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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