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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CAG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60137 (1 seq.)
>A171000302
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1436771
1436857
+
Leu
CAG
-
¡û
Identical group No.91057 (5 seq.)
>A171003633
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1367831
1367747
-
Leu
CAG
-
¡û
>A171006637
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
363749
363665
-
Leu
CAG
-
¡û
>W141000067
AADL01001450
Unclassified
mine drainage metagenome Group III [AADL]
1489
1405
-
Leu
CAG
[ENA]
¡û
>W1610000079
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
23713
23629
-
Leu
CAG
[ENA]
¡û
>WENV077075
AADL01001450
Acid Mine Drainage microbial communities from Richmond mine
1489
1402
-
Leu
CAG
[ENA]
Identical group No.91063 (5 seq.)
>A171007736
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
854914
855001
+
Leu
CAG
-
¡û
>A171007773
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
857374
857461
+
Leu
CAG
-
¡û
>W141000104
AADL01001629
Unclassified
mine drainage metagenome Group III [AADL]
3194
3281
+
Leu
CAG
[ENA]
¡û
>ENV09002213
ACXJ01011263
Mine drainage metagenome Contig1
7687
7600
-
Leu
CAG
[ENA]
¡û
>WENV077112
AADL01001629
Acid Mine Drainage microbial communities from Richmond mine
3194
3283
+
Leu
CAG
[ENA]
Identical group No.95682 (3 seq.)
>A171001354
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
233504
233589
+
Leu
CAG
-
¡û
>W1610000655
ABSD01000025
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
2996
2911
-
Leu
CAG
[ENA]
¡û
>W1610001709
ADFG01000034
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
906
991
+
Leu
CAG
[ENA]
¡û
Identical group No.98991 (1 seq.)
>A171002889
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
728873
728789
-
Leu
CAG
-
¡û
Identical group No.100830 (2 seq.)
>At1778
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1443023
1442939
-
Leu
CAG
[Ensembl]
¡û
>W1910469095
FWYE01000002
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
99672
99756
+
Leu
CAG
[ENA]
¡û
Identical group No.103056 (2 seq.)
>At1969
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
669964
670048
+
Leu
CAG
[Ensembl]
¡û
>W1911681170
QJSM01000021
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
80389
80303
-
Leu
CAG
[ENA]
¡û
Identical group No.113054 (10 seq.)
>A171003710
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1613981
1613895
-
Leu
CAG
-
¡û
>WENV180470014
OBYM01038143
[OBYM] human gut metagenome; faeces
585
671
+
Leu
CAG
[ENA]
¢þ
>WENV181035894
ODXP01000044
[ODXP] human metagenome; G_DNA_Stool
2502
2416
-
Leu
CAG
[ENA]
¢þ
>WENV181089650
OEBA01059260
[OEBA] human metagenome; G_DNA_Stool
194
108
-
Leu
CAG
[ENA]
¢þ
>WENV181702335
OGPH01056011
[OGPH] human gut metagenome; faeces
429
515
+
Leu
CAG
[ENA]
¢þ
>WENV182180972
OHNO01043147
[OHNO] human gut metagenome; feces
183
97
-
Leu
CAG
[ENA]
¢þ
>WENV182216269
OHQM01050597
[OHQM] human gut metagenome; feces
440
354
-
Leu
CAG
[ENA]
¢þ
>WENV182536619
OIXH01001046
[OIXH] human gut metagenome; faeces
1744
1658
-
Leu
CAG
[ENA]
¢þ
>WENV183038709
OLGB01001213
[OLGB] human gut metagenome; faeces
1675
1589
-
Leu
CAG
[ENA]
¢þ
>WENV183040897
OLGD01000212
[OLGD] human gut metagenome; faeces
117899
117985
+
Leu
CAG
[ENA]
¢þ
Identical group No.118652 (1 seq.)
>A179000416
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1515102
1515016
-
Leu
CAG
-
¡û
Identical group No.124577 (3 seq.)
>A171006504
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
138983
139069
+
Leu
CAG
-
¡û
>WENV180664827
OCVV011170784
[OCVV] gut metagenome; gut
387
301
-
Leu
CAG
[ENA]
¢þ
>WENV180664828
OCVV011170784
[OCVV] gut metagenome; gut
387
301
-
Leu
CAG
[ENA]
¢þ
Identical group No.130286 (1 seq.)
>At2045
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1089277
1089194
-
Leu
CAG
[Ensembl]
¡û
Identical group No.134980 (1 seq.)
>A171002546
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1332641
1332555
-
Leu
CAG
-
¡û
Identical group No.152466 (1 seq.)
>A171005748
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
131653
131569
-
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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