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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CAT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241106 (14 seq.)
>A171002534
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1238077
1238154
+
Met
CAT
-
¡û
>A171003522
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1415070
1415147
+
Met
CAT
-
¡û
>WENV180330580
OBKV01109037
[OBKV] human gut metagenome; human gut
150
227
+
fMet
CAT
[ENA]
¢þ
>WENV180679009
OCVV012143040
[OCVV] gut metagenome; gut
114
191
+
fMet
CAT
[ENA]
¢þ
>WENV180679010
OCVV012143040
[OCVV] gut metagenome; gut
114
191
+
fMet
CAT
[ENA]
¢þ
>WENV181607246
OGLM01005183
[OGLM] metagenome; Human gut stool
1242
1165
-
fMet
CAT
[ENA]
¢þ
>WENV181655566
OGOB01000128
[OGOB] metagenome; Human gut stool
34811
34888
+
fMet
CAT
[ENA]
¢þ
>WENV181772893
OGRD01031908
[OGRD] human gut metagenome; faeces
542
619
+
fMet
CAT
[ENA]
¢þ
>WENV182524229
OIWT01000083
[OIWT] human gut metagenome; faeces
2107
2184
+
fMet
CAT
[ENA]
¢þ
>WENV183045985
OLGE01046989
[OLGE] human gut metagenome; faeces
1047
970
-
fMet
CAT
[ENA]
¢þ
>WENV183382737
OLYL01011479
[OLYL] human gut metagenome; feces
398
475
+
fMet
CAT
[ENA]
¢þ
>WENV183438920
OMCF01011479
[OMCF] human gut metagenome; feces
398
475
+
fMet
CAT
[ENA]
¢þ
>WENV183517450
OMNP01001392
[OMNP] human gut metagenome; feces
2646
2569
-
fMet
CAT
[ENA]
¢þ
>W1610011071
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
561098
561021
-
Met
CAT
[ENA]
¡û
Identical group No.241222 (6 seq.)
>A171003695
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
423522
423597
+
Met
CAT
-
¡û
>WENV181036684
ODXP01002200
[ODXP] human metagenome; G_DNA_Stool
8168
8243
+
fMet
CAT
[ENA]
¢þ
>WENV181702066
OGPH01015731
[OGPH] human gut metagenome; faeces
1498
1573
+
fMet
CAT
[ENA]
¢þ
>WENV182535844
OIXH01000020
[OIXH] human gut metagenome; faeces
198456
198381
-
fMet
CAT
[ENA]
¢þ
>WENV183038249
OLGB01000252
[OLGB] human gut metagenome; faeces
4271
4346
+
fMet
CAT
[ENA]
¢þ
>WENV183040944
OLGD01000242
[OLGD] human gut metagenome; faeces
113672
113597
-
fMet
CAT
[ENA]
¢þ
Identical group No.245169 (5 seq.)
>A171003636
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1129105
1129031
-
Met
CAT
-
¡û
>A171006640
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
156681
156607
-
Met
CAT
-
¡û
>W141000047
AADL01001090
Unclassified
mine drainage metagenome Group III [AADL]
19006
19080
+
Met
CAT
[ENA]
¡û
>W1610000073
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
256171
256097
-
Met
CAT
[ENA]
¡û
>WENV077055
AADL01001090
Acid Mine Drainage microbial communities from Richmond mine
19006
19083
+
Met
CAT
[ENA]
Identical group No.245174 (7 seq.)
>A171007750
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1458879
1458805
-
Met
CAT
-
¡û
>A171007787
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1453056
1452982
-
Met
CAT
-
¡û
>W141000100
AADL01001607
Unclassified
mine drainage metagenome Group III [AADL]
439
365
-
Met
CAT
[ENA]
¡û
>WENV170013420
AUZX01003852
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
66
140
+
Met
CAT
[ENA]
¢þ
>ENV09002207
ACXJ01011195
Mine drainage metagenome Contig1
9373
9299
-
Met
CAT
[ENA]
¡û
>ENV09002328
ACXL01000016
Thermoplasmatales archaeon E-plasma EplasmaContig2057
39363
39289
-
Met
CAT
[ENA]
¡û
>WENV077107
AADL01001607
Acid Mine Drainage microbial communities from Richmond mine
439
362
-
Met
CAT
[ENA]
Identical group No.246527 (8 seq.)
>A171005727
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1004774
1004851
+
Met
CAT
-
¡û
>WENV182168080
OHMS01020861
[OHMS] human gut metagenome; feces
197
274
+
fMet
CAT
[ENA]
¢þ
>WENV182244909
OHSJ01010776
[OHSJ] human gut metagenome; feces
493
416
-
fMet
CAT
[ENA]
¢þ
>WENV182257438
OHTF01022951
[OHTF] human gut metagenome; feces
126
49
-
fMet
CAT
[ENA]
¢þ
>WENV182398711
OIEN01007308
[OIEN] human gut metagenome; human gut
2508
2585
+
fMet
CAT
[ENA]
¢þ
>WENV182652234
OJMH01010640
[OJMH] human gut metagenome; feces
2905
2828
-
fMet
CAT
[ENA]
¢þ
>WENV182885595
OKSC01012921
[OKSC] human gut metagenome; faeces
2487
2410
-
fMet
CAT
[ENA]
¢þ
>WENV183574952
OOCI01000144
[OOCI] human gut metagenome; human gut
45043
44966
-
fMet
CAT
[ENA]
¢þ
Identical group No.248905 (5 seq.)
>A171006532
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
215205
215128
-
Met
CAT
-
¡û
>WENV180665329
OCVV011184268
[OCVV] gut metagenome; gut
420
343
-
fMet
CAT
[ENA]
¢þ
>WENV180665330
OCVV011184268
[OCVV] gut metagenome; gut
420
343
-
fMet
CAT
[ENA]
¢þ
>WENV180667849
OCVV011244881
[OCVV] gut metagenome; gut
1749
1672
-
fMet
CAT
[ENA]
¢þ
>WENV180667850
OCVV011244881
[OCVV] gut metagenome; gut
1749
1672
-
fMet
CAT
[ENA]
¢þ
Identical group No.250761 (4 seq.)
>A178000313
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1407684
1407803
+
Met
CAT
-
¡û
>A179000138
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1344454
1344336
-
Met
CAT
-
¡û
>A17A000366
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1344454
1344335
-
Met
CAT
-
¡û
>W1610000654
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
177586
177511
-
Met
CAT
[ENA]
¡û
Identical group No.250763 (4 seq.)
>A171001376
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
712437
712362
-
Met
CAT
-
¡û
>W1610000685
ABSD01000048
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
59370
59447
+
Met
CAT
[ENA]
¡û
>W1610000692
ABSD01000051
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
47412
47335
-
Met
CAT
[ENA]
¡û
>W1610001707
ADFG01000031
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
10679
10602
-
Met
CAT
[ENA]
¡û
Identical group No.253141 (1 seq.)
>At2023
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1231952
1232026
+
Met
CAT
[Ensembl]
¡û
Identical group No.254679 (1 seq.)
>A178000304
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
267860
267981
+
Met
CAT
-
¡û
Identical group No.256484 (2 seq.)
>A179000025
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1270744
1270847
+
Met
CAT
-
¡û
>A17A000056
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1270744
1270847
+
Met
CAT
-
¡û
Identical group No.256625 (2 seq.)
>At1752
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
283497
283423
-
Met
CAT
[Ensembl]
¡û
>W1910469105
FWYE01000005
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
39019
38944
-
Met
CAT
[ENA]
¡û
Identical group No.259314 (2 seq.)
>At1992
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
423492
423418
-
Met
CAT
[Ensembl]
¡û
>W1911681165
QJSM01000018
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
57320
57245
-
Met
CAT
[ENA]
¡û
Identical group No.274419 (10 seq.)
>A171003527
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1626315
1626391
+
Met
CAT
-
¡û
>WENV181607424
OGLM01008840
[OGLM] metagenome; Human gut stool
3533
3609
+
Met
CAT
[ENA]
¢þ
>WENV181655888
OGOB01003277
[OGOB] metagenome; Human gut stool
2222
2146
-
Met
CAT
[ENA]
¢þ
>WENV181772345
OGRD01001722
[OGRD] human gut metagenome; faeces
7113
7037
-
Met
CAT
[ENA]
¢þ
>WENV182524077
OIWT01000033
[OIWT] human gut metagenome; faeces
79967
80043
+
Met
CAT
[ENA]
¢þ
>WENV183045128
OLGE01005437
[OLGE] human gut metagenome; faeces
5115
5191
+
Met
CAT
[ENA]
¢þ
>WENV183409906
OMAG01016043
[OMAG] human gut metagenome; feces
1226
1302
+
Met
CAT
[ENA]
¢þ
>WENV183458539
OMDM01023165
[OMDM] human gut metagenome; feces
1119
1043
-
Met
CAT
[ENA]
¢þ
>WENV183517856
OMNP01021472
[OMNP] human gut metagenome; feces
761
685
-
Met
CAT
[ENA]
¢þ
>W1610011076
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
349853
349777
-
Met
CAT
[ENA]
¡û
Identical group No.275022 (11 seq.)
>A171003692
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
329880
329954
+
Met
CAT
-
¡û
>WENV180240396
OBDC01044069
[OBDC] human gut metagenome; human gut
217
291
+
Met
CAT
[ENA]
¢þ
>WENV180963710
ODUN01362957
[ODUN] human metagenome; G_DNA_Stool
9
83
+
Met
CAT
[ENA]
¢þ
>WENV181035957
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
46264
46338
+
Met
CAT
[ENA]
¢þ
>WENV181088649
OEBA01003255
[OEBA] human metagenome; G_DNA_Stool
8700
8626
-
Met
CAT
[ENA]
¢þ
>WENV181701803
OGPH01006007
[OGPH] human gut metagenome; faeces
290
216
-
Met
CAT
[ENA]
¢þ
>WENV182082200
OHGK01038323
[OHGK] human gut metagenome; feces
397
323
-
Met
CAT
[ENA]
¢þ
>WENV182181010
OHNO01050631
[OHNO] human gut metagenome; feces
312
238
-
Met
CAT
[ENA]
¢þ
>WENV182536309
OIXH01000420
[OIXH] human gut metagenome; faeces
51298
51224
-
Met
CAT
[ENA]
¢þ
>WENV183039492
OLGB01007751
[OLGB] human gut metagenome; faeces
6084
6010
-
Met
CAT
[ENA]
¢þ
>WENV183041308
OLGD01000561
[OLGD] human gut metagenome; faeces
51298
51224
-
Met
CAT
[ENA]
¢þ
Identical group No.275024 (8 seq.)
>A171003707
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1728473
1728399
-
Met
CAT
-
¡û
>WENV180620407
OCQB01071388
[OCQB] human gut metagenome; human gut
408
334
-
Met
CAT
[ENA]
¢þ
>WENV180963533
ODUN01237963
[ODUN] human metagenome; G_DNA_Stool
267
193
-
Met
CAT
[ENA]
¢þ
>WENV181036120
ODXP01000249
[ODXP] human metagenome; G_DNA_Stool
35623
35697
+
Met
CAT
[ENA]
¢þ
>WENV181088719
OEBA01004139
[OEBA] human metagenome; G_DNA_Stool
4145
4219
+
Met
CAT
[ENA]
¢þ
>WENV182535973
OIXH01000061
[OIXH] human gut metagenome; faeces
59291
59217
-
Met
CAT
[ENA]
¢þ
>WENV183039035
OLGB01002571
[OLGB] human gut metagenome; faeces
16441
16515
+
Met
CAT
[ENA]
¢þ
>WENV183040832
OLGD01000170
[OLGD] human gut metagenome; faeces
59294
59220
-
Met
CAT
[ENA]
¢þ
Identical group No.301939 (2 seq.)
>A179000295
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1186302
1186195
-
Met
CAT
-
¡û
>A179000417
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1362724
1362615
-
Met
CAT
-
¡û
Identical group No.304172 (18 seq.)
>A171003641
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
624622
624548
-
Met
CAT
-
¡û
>A171006633
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1489065
1488991
-
Met
CAT
-
¡û
>W141000049
AADL01001092
Unclassified
mine drainage metagenome Group III [AADL]
8575
8649
+
Met
CAT
[ENA]
¡û
>W141000133
AADL01001881
Unclassified
mine drainage metagenome Group III [AADL]
1094
1021
-
Met
CAT
[ENA]
¡û
>W141000157
AADL01002346
Unclassified
mine drainage metagenome Group III [AADL]
595
668
+
Met
CAT
[ENA]
¡û
>W141000158
AADL01002367
Unclassified
mine drainage metagenome Group III [AADL]
942
869
-
Met
CAT
[ENA]
¡û
>At1764
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
780891
780818
-
Met
CAT
[Ensembl]
¡û
>W1910469080
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
195974
196047
+
Met
CAT
[ENA]
¡û
>W1910585077
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
232415
232488
+
Met
CAT
[ENA]
¡û
>W1610000064
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
161780
161706
-
Met
CAT
[ENA]
¡û
>W1610047595
BBDK01000021
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
19809
19882
+
Met
CAT
[ENA]
¡û
>W1610642309
LJCQ01000275
Unclassified
Acidiplasma aeolicum V [LJCQ]
27773
27846
+
Met
CAT
[ENA]
¡û
>W1610670466
LKBG01000233
Unclassified
Acidiplasma aeolicum VT [LKBG]
1534
1607
+
Met
CAT
[ENA]
¡û
>W1610670488
LKBH01000015
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
17827
17754
-
Met
CAT
[ENA]
¡û
>WENV077057
AADL01001092
Acid Mine Drainage microbial communities from Richmond mine
8574
8652
+
Met
CAT
[ENA]
>WENV077140
AADL01001881
Acid Mine Drainage microbial communities from Richmond mine
1094
1018
-
Met
CAT
[ENA]
>WENV077165
AADL01002346
Acid Mine Drainage microbial communities from Richmond mine
595
671
+
Met
CAT
[ENA]
>WENV077166
AADL01002367
Acid Mine Drainage microbial communities from Richmond mine
942
866
-
Met
CAT
[ENA]
Identical group No.304180 (5 seq.)
>A171007741
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1194541
1194614
+
Met
CAT
-
¡û
>A171007778
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1197159
1197232
+
Met
CAT
-
¡û
>W141000128
AADL01001785
Unclassified
mine drainage metagenome Group III [AADL]
1114
1041
-
Met
CAT
[ENA]
¡û
>ENV09002219
ACXJ01011277
Mine drainage metagenome Contig1
668
741
+
Met
CAT
[ENA]
¡û
>WENV077135
AADL01001785
Acid Mine Drainage microbial communities from Richmond mine
1114
1038
-
Met
CAT
[ENA]
Identical group No.352074 (1 seq.)
>At2041
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
841178
841105
-
Met
CAT
[Ensembl]
¡û
Identical group No.361498 (2 seq.)
>A179000143
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
604937
604831
-
Met
CAT
-
¡û
>A179000338
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
348903
349008
+
Met
CAT
-
¡û
Identical group No.372596 (1 seq.)
>A171000300
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1413854
1413928
+
Met
CAT
-
¡û
Identical group No.372627 (1 seq.)
>A171002539
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1417088
1417162
+
Met
CAT
-
¡û
Identical group No.388915 (2 seq.)
>At1971
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
826120
826193
+
Met
CAT
[Ensembl]
¡û
>W1911681167
QJSM01000020
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
172857
172932
+
Met
CAT
[ENA]
¡û
Identical group No.399299 (1 seq.)
>A171006537
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
51076
51000
-
Met
CAT
-
¡û
Identical group No.399314 (1 seq.)
>A179000653
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
272343
272451
+
Met
CAT
-
¡û
Identical group No.446339 (1 seq.)
>A171005739
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1418698
1418623
-
Met
CAT
-
¡û
Identical group No.446356 (1 seq.)
>A179000556
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
879126
879022
-
Met
CAT
-
¡û
Identical group No.446953 (1 seq.)
>C151068556
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
135863
135936
+
Met
CAT
-
¡û
Identical group No.507989 (2 seq.)
>A178000370
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1413926
1414014
+
Met
CAT
-
¡û
>A178000669
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
388126
388214
+
Met
CAT
-
¡û
Identical group No.540868 (1 seq.)
>At2050
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1311796
1311710
-
Met
CAT
[Ensembl]
¡û
Identical group No.564477 (1 seq.)
>At1748
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1527895
1527982
+
Met
CAT
[Ensembl]
¡û
Identical group No.604025 (1 seq.)
>At1979
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1240260
1240346
+
Met
CAT
[Ensembl]
¡û
Identical group No.612945 (2 seq.)
>A178000754
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1356010
1356098
+
Met
CAT
-
¡û
>A178000755
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1357590
1357678
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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