This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CCG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256439 (1 seq.)
>A171000321
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1331853
1331778
-
Arg
CCG
-
¡û
Identical group No.274414 (8 seq.)
>A171003515
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
402028
402102
+
Arg
CCG
-
¡û
>WENV180326252
OBKS01045479
[OBKS] human gut metagenome; human gut
205
279
+
Arg
CCG
[ENA]
¢þ
>WENV181606390
OGLM01000182
[OGLM] metagenome; Human gut stool
26883
26809
-
Arg
CCG
[ENA]
¢þ
>WENV181655928
OGOB01004897
[OGOB] metagenome; Human gut stool
2492
2418
-
Arg
CCG
[ENA]
¢þ
>WENV181772505
OGRD01005291
[OGRD] human gut metagenome; faeces
1293
1367
+
Arg
CCG
[ENA]
¢þ
>WENV182525964
OIWT01005931
[OIWT] human gut metagenome; faeces
8034
7960
-
Arg
CCG
[ENA]
¢þ
>WENV183046052
OLGE01056704
[OLGE] human gut metagenome; faeces
493
567
+
Arg
CCG
[ENA]
¢þ
>W1610011049
AMSE01000004
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
1000
924
-
Arg
CCG
[ENA]
¡û
Identical group No.275062 (1 seq.)
>A179000422
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
730130
730223
+
Arg
CCG
-
¡û
Identical group No.361489 (1 seq.)
>A178000305
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
421631
421754
+
Arg
CCG
-
¡û
Identical group No.372626 (1 seq.)
>A171002527
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
449433
449507
+
Arg
CCG
-
¡û
Identical group No.446361 (1 seq.)
>A173000245
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
399547
399622
+
Arg
CCG
-
¡û
Identical group No.488103 (14 seq.)
>A171003616
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
232717
232789
+
Arg
CCG
-
¡û
>A171006620
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1119918
1119990
+
Arg
CCG
-
¡û
>W141000056
AADL01001175
Unclassified
mine drainage metagenome Group III [AADL]
5407
5479
+
Arg
CCG
[ENA]
¡û
>W141000066
AADL01001418
Unclassified
mine drainage metagenome Group III [AADL]
891
963
+
Arg
CCG
[ENA]
¡û
>W141000089
AADL01001523
Unclassified
mine drainage metagenome Group III [AADL]
17335
17407
+
Arg
CCG
[ENA]
¡û
>W141000134
AADL01001898
Unclassified
mine drainage metagenome Group III [AADL]
206
134
-
Arg
CCG
[ENA]
¡û
>W141000149
AADL01002159
Unclassified
mine drainage metagenome Group III [AADL]
456
528
+
Arg
CCG
[ENA]
¡û
>ENV09002115
ACXJ01009965
Mine drainage metagenome Contig1
1209
1281
+
Arg
CCG
[ENA]
¡û
>W1610000055
AABC05000005
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
134731
134803
+
Arg
CCG
[ENA]
¡û
>WENV077064
AADL01001175
Acid Mine Drainage microbial communities from Richmond mine
5407
5482
+
Arg
CCG
[ENA]
>WENV077074
AADL01001418
Acid Mine Drainage microbial communities from Richmond mine
891
966
+
Arg
CCG
[ENA]
>WENV077097
AADL01001523
Acid Mine Drainage microbial communities from Richmond mine
17335
17410
+
Arg
CCG
[ENA]
>WENV077142
AADL01001898
Acid Mine Drainage microbial communities from Richmond mine
206
131
-
Arg
CCG
[ENA]
>WENV077157
AADL01002159
Acid Mine Drainage microbial communities from Richmond mine
456
531
+
Arg
CCG
[ENA]
Identical group No.541359 (3 seq.)
>At1982
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1402849
1402924
+
Arg
CCG
[Ensembl]
¡û
>At2039
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
483188
483116
-
Arg
CCG
[Ensembl]
¡û
>W1911681179
QJSM01000036
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
103890
103962
+
Arg
CCG
[ENA]
¡û
Identical group No.564827 (2 seq.)
>At1746
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1018545
1018617
+
Arg
CCG
[Ensembl]
¡û
>W1910469098
FWYE01000003
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
40980
41052
+
Arg
CCG
[ENA]
¡û
Identical group No.585692 (1 seq.)
>A179000144
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
546270
546147
-
Arg
CCG
-
¡û
Identical group No.674648 (5 seq.)
>A171007755
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
861553
861481
-
Arg
CCG
-
¡û
>A171007792
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
864013
863941
-
Arg
CCG
-
¡û
>W141000105
AADL01001629
Unclassified
mine drainage metagenome Group III [AADL]
9833
9759
-
Arg
CCG
[ENA]
¡û
>ENV09002212
ACXJ01011263
Mine drainage metagenome Contig1
1048
1122
+
Arg
CCG
[ENA]
¡û
>WENV077113
AADL01001629
Acid Mine Drainage microbial communities from Richmond mine
9834
9758
-
Arg
CCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK