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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CCT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241103 (13 seq.)
>A171003516
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
592771
592848
+
Arg
CCT
-
¡û
>WENV180327022
OBKS01342656
[OBKS] human gut metagenome; human gut
18
95
+
Arg
CCT
[ENA]
¢þ
>WENV181606649
OGLM01000666
[OGLM] metagenome; Human gut stool
4357
4434
+
Arg
CCT
[ENA]
¢þ
>WENV181655853
OGOB01002392
[OGOB] metagenome; Human gut stool
752
675
-
Arg
CCT
[ENA]
¢þ
>WENV181772542
OGRD01006269
[OGRD] human gut metagenome; faeces
1601
1524
-
Arg
CCT
[ENA]
¢þ
>WENV182524784
OIWT01000570
[OIWT] human gut metagenome; faeces
35485
35408
-
Arg
CCT
[ENA]
¢þ
>WENV183045780
OLGE01025092
[OLGE] human gut metagenome; faeces
666
743
+
Arg
CCT
[ENA]
¢þ
>WENV183382602
OLYL01004817
[OLYL] human gut metagenome; feces
339
262
-
Arg
CCT
[ENA]
¢þ
>WENV183409753
OMAG01007076
[OMAG] human gut metagenome; feces
1376
1299
-
Arg
CCT
[ENA]
¢þ
>WENV183438785
OMCF01004817
[OMCF] human gut metagenome; feces
339
262
-
Arg
CCT
[ENA]
¢þ
>WENV183458469
OMDM01017039
[OMDM] human gut metagenome; feces
140
63
-
Arg
CCT
[ENA]
¢þ
>WENV183517605
OMNP01005322
[OMNP] human gut metagenome; feces
1781
1858
+
Arg
CCT
[ENA]
¢þ
>W1610011044
AMSE01000002
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
274854
274777
-
Arg
CCT
[ENA]
¡û
Identical group No.241223 (8 seq.)
>A171003699
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
786206
786283
+
Arg
CCT
-
¡û
>WENV181035826
ODXP01000012
[ODXP] human metagenome; G_DNA_Stool
144181
144258
+
Arg
CCT
[ENA]
¢þ
>WENV181089093
OEBA01012244
[OEBA] human metagenome; G_DNA_Stool
86
9
-
Arg
CCT
[ENA]
¢þ
>WENV181702348
OGPH01058761
[OGPH] human gut metagenome; faeces
410
487
+
Arg
CCT
[ENA]
¢þ
>WENV182212930
OHQG01018266
[OHQG] human gut metagenome; feces
938
861
-
Arg
CCT
[ENA]
¢þ
>WENV182535786
OIXH01000001
[OIXH] human gut metagenome; faeces
26827
26750
-
Arg
CCT
[ENA]
¢þ
>WENV183038995
OLGB01002333
[OLGB] human gut metagenome; faeces
255
178
-
Arg
CCT
[ENA]
¢þ
>WENV183040431
OLGD01000006
[OLGD] human gut metagenome; faeces
26827
26750
-
Arg
CCT
[ENA]
¢þ
Identical group No.248916 (3 seq.)
>A171006510
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
718372
718449
+
Arg
CCT
-
¡û
>WENV180666241
OCVV011207502
[OCVV] gut metagenome; gut
96
19
-
Arg
CCT
[ENA]
¢þ
>WENV180666242
OCVV011207502
[OCVV] gut metagenome; gut
96
19
-
Arg
CCT
[ENA]
¢þ
Identical group No.250762 (5 seq.)
>A171001357
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
856330
856405
+
Arg
CCT
-
¡û
>A171002892
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
102763
102688
-
Arg
CCT
-
¡û
>W1610000656
ABSD01000027
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
16250
16325
+
Arg
CCT
[ENA]
¡û
>W1610000675
ABSD01000040
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
17680
17755
+
Arg
CCT
[ENA]
¡û
>W1610001695
ADFG01000010
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
32748
32823
+
Arg
CCT
[ENA]
¡û
Identical group No.253199 (3 seq.)
>At1983
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1404530
1404604
+
Arg
CCT
[Ensembl]
¡û
>At2033
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
312617
312543
-
Arg
CCT
[Ensembl]
¡û
>W1930037682
QJSM01000036
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
105599
105675
+
Arg
CCT
[ENA]
¡û
Identical group No.256433 (1 seq.)
>A171000294
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1340553
1340630
+
Arg
CCT
-
¡û
Identical group No.256456 (1 seq.)
>A171002528
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
576069
576146
+
Arg
CCT
-
¡û
Identical group No.256677 (2 seq.)
>At1777
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
1323417
1323343
-
Arg
CCT
[Ensembl]
¡û
>W1910469096
FWYE01000002
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
219276
219351
+
Arg
CCT
[ENA]
¡û
Identical group No.269525 (1 seq.)
>A171005718
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
353425
353500
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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