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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CGG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372601 (1 seq.)
>A171000324
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1272345
1272272
-
Pro
CGG
-
¡û
Identical group No.455541 (9 seq.)
>A171003542
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
484985
484912
-
Pro
CGG
-
¡û
>WENV181607178
OGLM01004395
[OGLM] metagenome; Human gut stool
7199
7126
-
Pro
CGG
[ENA]
¢þ
>WENV181655775
OGOB01001101
[OGOB] metagenome; Human gut stool
6835
6762
-
Pro
CGG
[ENA]
¢þ
>WENV182525672
OIWT01003625
[OIWT] human gut metagenome; faeces
10264
10191
-
Pro
CGG
[ENA]
¢þ
>WENV183045507
OLGE01013159
[OLGE] human gut metagenome; faeces
3173
3246
+
Pro
CGG
[ENA]
¢þ
>WENV183409814
OMAG01009470
[OMAG] human gut metagenome; feces
332
405
+
Pro
CGG
[ENA]
¢þ
>WENV183458376
OMDM01009650
[OMDM] human gut metagenome; feces
1697
1624
-
Pro
CGG
[ENA]
¢þ
>W1610011045
AMSE01000003
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
8803
8876
+
Pro
CGG
[ENA]
¡û
>W1610799748
LOPS01000014
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
12301
12374
+
Pro
CGG
[ENA]
¡û
Identical group No.456283 (6 seq.)
>A171003704
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1530402
1530477
+
Pro
CGG
-
¡û
>WENV181035838
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
66269
66194
-
Pro
CGG
[ENA]
¢þ
>WENV181088667
OEBA01003496
[OEBA] human metagenome; G_DNA_Stool
5798
5873
+
Pro
CGG
[ENA]
¢þ
>WENV182535782
OIXH01000001
[OIXH] human gut metagenome; faeces
368558
368633
+
Pro
CGG
[ENA]
¢þ
>WENV183039497
OLGB01007966
[OLGB] human gut metagenome; faeces
2390
2315
-
Pro
CGG
[ENA]
¢þ
>WENV183040427
OLGD01000006
[OLGD] human gut metagenome; faeces
368557
368632
+
Pro
CGG
[ENA]
¢þ
Identical group No.488111 (5 seq.)
>A171007752
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1398998
1398926
-
Pro
CGG
-
¡û
>A171007789
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1393176
1393104
-
Pro
CGG
-
¡û
>W141000123
AADL01001748
Unclassified
mine drainage metagenome Group III [AADL]
3458
3530
+
Pro
CGG
[ENA]
¡û
>ENV09002248
ACXJ01012059
Mine drainage metagenome Contig1
3879
3807
-
Pro
CGG
[ENA]
¡û
>WENV077131
AADL01001748
Acid Mine Drainage microbial communities from Richmond mine
3458
3533
+
Pro
CGG
[ENA]
Identical group No.514298 (3 seq.)
>A171006529
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
552391
552318
-
Pro
CGG
-
¡û
>WENV180661877
OCVV011041094
[OCVV] gut metagenome; gut
489
562
+
Pro
CGG
[ENA]
¢þ
>WENV180661878
OCVV011041094
[OCVV] gut metagenome; gut
489
562
+
Pro
CGG
[ENA]
¢þ
Identical group No.541353 (2 seq.)
>At1995
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
563108
563036
-
Pro
CGG
[Ensembl]
¡û
>At2018
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
574121
574193
+
Pro
CGG
[Ensembl]
¡û
Identical group No.551698 (2 seq.)
>A179000142
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
738958
738833
-
Pro
CGG
-
¡û
>A179000337
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
253637
253756
+
Pro
CGG
-
¡û
Identical group No.563645 (1 seq.)
>A171002556
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
516600
516527
-
Pro
CGG
-
¡û
Identical group No.564829 (1 seq.)
>At1749
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
95163
95091
-
Pro
CGG
[Ensembl]
¡û
Identical group No.647534 (1 seq.)
>A171005717
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
316042
316115
+
Pro
CGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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