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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CTG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455550 (14 seq.)
>A171003521
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1376590
1376665
+
Gln
CTG
-
¡û
>WENV180326732
OBKS01154960
[OBKS] human gut metagenome; human gut
192
267
+
Gln
CTG
[ENA]
¢þ
>WENV180341818
OBLI01236910
[OBLI] pig gut metagenome; faeces
230
155
-
Gln
CTG
[ENA]
¢þ
>WENV180671411
OCVV011317215
[OCVV] gut metagenome; gut
89
164
+
Gln
CTG
[ENA]
¢þ
>WENV180671412
OCVV011317215
[OCVV] gut metagenome; gut
89
164
+
Gln
CTG
[ENA]
¢þ
>WENV181606820
OGLM01001333
[OGLM] metagenome; Human gut stool
195
270
+
Gln
CTG
[ENA]
¢þ
>WENV181655796
OGOB01001365
[OGOB] metagenome; Human gut stool
4538
4613
+
Gln
CTG
[ENA]
¢þ
>WENV181772517
OGRD01005694
[OGRD] human gut metagenome; faeces
2141
2216
+
Gln
CTG
[ENA]
¢þ
>WENV182524569
OIWT01000340
[OIWT] human gut metagenome; faeces
52886
52811
-
Gln
CTG
[ENA]
¢þ
>WENV183045550
OLGE01014415
[OLGE] human gut metagenome; faeces
2543
2468
-
Gln
CTG
[ENA]
¢þ
>WENV183382937
OLYL01036496
[OLYL] human gut metagenome; feces
652
577
-
Gln
CTG
[ENA]
¢þ
>WENV183439120
OMCF01036496
[OMCF] human gut metagenome; feces
652
577
-
Gln
CTG
[ENA]
¢þ
>WENV183517922
OMNP01028551
[OMNP] human gut metagenome; feces
260
185
-
Gln
CTG
[ENA]
¢þ
>W1610011070
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
599578
599503
-
Gln
CTG
[ENA]
¡û
Identical group No.456279 (10 seq.)
>A171003691
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
309949
310024
+
Gln
CTG
-
¡û
>WENV180963365
ODUN01138878
[ODUN] human metagenome; G_DNA_Stool
180
105
-
Gln
CTG
[ENA]
¢þ
>WENV181035956
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
27234
27309
+
Gln
CTG
[ENA]
¢þ
>WENV181088446
OEBA01001595
[OEBA] human metagenome; G_DNA_Stool
11873
11948
+
Gln
CTG
[ENA]
¢þ
>WENV181701861
OGPH01007080
[OGPH] human gut metagenome; faeces
284
359
+
Gln
CTG
[ENA]
¢þ
>WENV182058669
OHEP01039197
[OHEP] human gut metagenome; feces
514
439
-
Gln
CTG
[ENA]
¢þ
>WENV182193708
OHPB01015391
[OHPB] human gut metagenome; feces
33
108
+
Gln
CTG
[ENA]
¢þ
>WENV182536666
OIXH01001232
[OIXH] human gut metagenome; faeces
14822
14897
+
Gln
CTG
[ENA]
¢þ
>WENV183039250
OLGB01004646
[OLGB] human gut metagenome; faeces
405
330
-
Gln
CTG
[ENA]
¢þ
>WENV183042148
OLGD01002431
[OLGD] human gut metagenome; faeces
14890
14815
-
Gln
CTG
[ENA]
¢þ
Identical group No.488101 (7 seq.)
>A171003639
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
649711
649639
-
Gln
CTG
-
¡û
>A171006631
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1514155
1514083
-
Gln
CTG
-
¡û
>W141000053
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
9571
9499
-
Gln
CTG
[ENA]
¡û
>W141000095
AADL01001561
Unclassified
mine drainage metagenome Group III [AADL]
8239
8311
+
Gln
CTG
[ENA]
¡û
>W1610000062
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
186869
186797
-
Gln
CTG
[ENA]
¡û
>WENV077061
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
9571
9496
-
Gln
CTG
[ENA]
>WENV077103
AADL01001561
Acid Mine Drainage microbial communities from Richmond mine
8239
8314
+
Gln
CTG
[ENA]
Identical group No.488110 (4 seq.)
>A171007732
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
667938
668011
+
Gln
CTG
-
¡û
>A171007769
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
668494
668567
+
Gln
CTG
-
¡û
>W141000120
AADL01001705
Unclassified
mine drainage metagenome Group III [AADL]
7800
7873
+
Gln
CTG
[ENA]
¡û
>WENV077128
AADL01001705
Acid Mine Drainage microbial communities from Richmond mine
7799
7876
+
Gln
CTG
[ENA]
Identical group No.507304 (6 seq.)
>At1754
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
306420
306348
-
Gln
CTG
[Ensembl]
¡û
>W1910469103
FWYE01000005
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
61942
61870
-
Gln
CTG
[ENA]
¡û
>W1910585087
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
102562
102490
-
Gln
CTG
[ENA]
¡û
>W1610642314
LJCQ01000322
Unclassified
Acidiplasma aeolicum V [LJCQ]
1655
1583
-
Gln
CTG
[ENA]
¡û
>W1610670457
LKBG01000089
Unclassified
Acidiplasma aeolicum VT [LKBG]
5408
5480
+
Gln
CTG
[ENA]
¡û
>W1610670510
LKBH01000267
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
6188
6116
-
Gln
CTG
[ENA]
¡û
Identical group No.541358 (1 seq.)
>At2034
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
331177
331105
-
Gln
CTG
[Ensembl]
¡û
Identical group No.551671 (1 seq.)
>A171002881
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1217240
1217167
-
Gln
CTG
-
¡û
Identical group No.563623 (1 seq.)
>A171000296
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1388269
1388342
+
Gln
CTG
-
¡û
Identical group No.563639 (1 seq.)
>A171002533
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1199653
1199726
+
Gln
CTG
-
¡û
Identical group No.577049 (3 seq.)
>A171005726
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
935767
935842
+
Gln
CTG
-
¡û
>WENV180341026
OBLI01067624
[OBLI] pig gut metagenome; faeces
914
839
-
Gln
CTG
[ENA]
¢þ
>W1610651900
LJKL01000013
Unclassified
Methanomassiliicoccales archaeon RumEn M2 [LJKL]
61963
61888
-
Gln
CTG
[ENA]
¡û
Identical group No.582492 (2 seq.)
>At2004
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1327651
1327579
-
Gln
CTG
[Ensembl]
¡û
>W1911681183
QJSM01000036
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
37719
37647
-
Gln
CTG
[ENA]
¡û
Identical group No.585691 (2 seq.)
>A179000137
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1163399
1163518
+
Gln
CTG
-
¡û
>A17A000364
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1163399
1163518
+
Gln
CTG
-
¡û
Identical group No.594129 (1 seq.)
>A171006531
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
256652
256577
-
Gln
CTG
-
¡û
Identical group No.639791 (1 seq.)
>C151068552
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
602487
602413
-
Gln
CTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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