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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CTT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274415 (12 seq.)
>A171003548
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
116038
115962
-
Lys
CTT
-
¡û
>WENV180326938
OBKS01252741
[OBKS] human gut metagenome; human gut
102
26
-
Lys
CTT
[ENA]
¢þ
>WENV180341498
OBLI01142254
[OBLI] pig gut metagenome; faeces
69
145
+
Lys
CTT
[ENA]
¢þ
>WENV181606510
OGLM01000405
[OGLM] metagenome; Human gut stool
22483
22558
+
Lys
CTT
[ENA]
¢þ
>WENV181655692
OGOB01000524
[OGOB] metagenome; Human gut stool
18385
18460
+
Lys
CTT
[ENA]
¢þ
>WENV181772338
OGRD01001648
[OGRD] human gut metagenome; faeces
3312
3388
+
Lys
CTT
[ENA]
¢þ
>WENV182524786
OIWT01000573
[OIWT] human gut metagenome; faeces
13241
13165
-
Lys
CTT
[ENA]
¢þ
>WENV183045295
OLGE01008493
[OLGE] human gut metagenome; faeces
3465
3389
-
Lys
CTT
[ENA]
¢þ
>WENV183382621
OLYL01005327
[OLYL] human gut metagenome; feces
3300
3376
+
Lys
CTT
[ENA]
¢þ
>WENV183438804
OMCF01005327
[OMCF] human gut metagenome; feces
3300
3376
+
Lys
CTT
[ENA]
¢þ
>WENV183517849
OMNP01020527
[OMNP] human gut metagenome; feces
923
999
+
Lys
CTT
[ENA]
¢þ
>W1610011054
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
193335
193411
+
Lys
CTT
[ENA]
¡û
Identical group No.275023 (10 seq.)
>A171003706
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1790746
1790821
+
Lys
CTT
-
¡û
>WENV180036989
FVAA010508646
[FVAA] soil metagenome; Soil
97
21
-
Lys
CTT
[ENA]
¢þ
>WENV181036503
ODXP01000985
[ODXP] human metagenome; G_DNA_Stool
10677
10752
+
Lys
CTT
[ENA]
¢þ
>WENV181088617
OEBA01002855
[OEBA] human metagenome; G_DNA_Stool
3395
3470
+
Lys
CTT
[ENA]
¢þ
>WENV181231755
OFEK01061692
[OFEK] activated sludge metagenome; Anaerobic digester
101
177
+
Lys
CTT
[ENA]
¢þ
>WENV181701962
OGPH01010550
[OGPH] human gut metagenome; faeces
2142
2217
+
Lys
CTT
[ENA]
¢þ
>WENV182535972
OIXH01000061
[OIXH] human gut metagenome; faeces
119860
119935
+
Lys
CTT
[ENA]
¢þ
>WENV183038317
OLGB01000324
[OLGB] human gut metagenome; faeces
44116
44191
+
Lys
CTT
[ENA]
¢þ
>WENV183040831
OLGD01000170
[OLGD] human gut metagenome; faeces
119863
119938
+
Lys
CTT
[ENA]
¢þ
>WENV170672065
LAHU01293501
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
76
152
+
Lys
CTT
[ENA]
¢þ
Identical group No.304175 (11 seq.)
>A171003637
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1084990
1084915
-
Lys
CTT
-
¡û
>A171006641
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
115375
115301
-
Lys
CTT
-
¡û
>W141000065
AADL01001403
Unclassified
mine drainage metagenome Group III [AADL]
928
854
-
Lys
CTT
[ENA]
¡û
>W141000093
AADL01001538
Unclassified
mine drainage metagenome Group III [AADL]
20995
21069
+
Lys
CTT
[ENA]
¡û
>W1910585079
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
435616
435690
+
Lys
CTT
[ENA]
¡û
>W1610000074
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
212056
211981
-
Lys
CTT
[ENA]
¡û
>W1610047581
BBDK01000002
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
58399
58473
+
Lys
CTT
[ENA]
¡û
>W1610670451
LKBG01000001
Unclassified
Acidiplasma aeolicum VT [LKBG]
11466
11392
-
Lys
CTT
[ENA]
¡û
>W1610670498
LKBH01000125
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
20728
20802
+
Lys
CTT
[ENA]
¡û
>WENV077073
AADL01001403
Acid Mine Drainage microbial communities from Richmond mine
929
851
-
Lys
CTT
[ENA]
>WENV077101
AADL01001538
Acid Mine Drainage microbial communities from Richmond mine
20994
21072
+
Lys
CTT
[ENA]
Identical group No.304179 (5 seq.)
>A171007744
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1515590
1515664
+
Lys
CTT
-
¡û
>A171007781
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1503586
1503660
+
Lys
CTT
-
¡û
>W141000124
AADL01001761
Unclassified
mine drainage metagenome Group III [AADL]
2338
2414
+
Lys
CTT
[ENA]
¡û
>ENV09002162
ACXJ01010617
Mine drainage metagenome Contig1
2866
2940
+
Lys
CTT
[ENA]
¡û
>WENV077132
AADL01001761
Acid Mine Drainage microbial communities from Richmond mine
2337
2415
+
Lys
CTT
[ENA]
Identical group No.313599 (14 seq.)
>A171006519
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1813979
1814055
+
Lys
CTT
-
¡û
>WENV180346869
OBLN01366383
[OBLN] sediment metagenome; sediment
104
178
+
Lys
CTT
[ENA]
¢þ
>WENV180669995
OCVV011291696
[OCVV] gut metagenome; gut
2484
2560
+
Lys
CTT
[ENA]
¢þ
>WENV180669996
OCVV011291696
[OCVV] gut metagenome; gut
2484
2560
+
Lys
CTT
[ENA]
¢þ
>WENV180680203
OCVV012479831
[OCVV] gut metagenome; gut
3
79
+
Lys
CTT
[ENA]
¢þ
>WENV180680204
OCVV012479831
[OCVV] gut metagenome; gut
3
79
+
Lys
CTT
[ENA]
¢þ
>WENV182072294
OHFM01024717
[OHFM] human gut metagenome; feces
474
398
-
Lys
CTT
[ENA]
¢þ
>WENV182114482
OHIY01046782
[OHIY] human gut metagenome; feces
177
253
+
Lys
CTT
[ENA]
¢þ
>WENV182168264
OHMS01045776
[OHMS] human gut metagenome; feces
308
232
-
Lys
CTT
[ENA]
¢þ
>WENV182245006
OHSJ01018832
[OHSJ] human gut metagenome; feces
482
558
+
Lys
CTT
[ENA]
¢þ
>WENV182257358
OHTF01016047
[OHTF] human gut metagenome; feces
1021
945
-
Lys
CTT
[ENA]
¢þ
>WENV182398946
OIEN01016088
[OIEN] human gut metagenome; human gut
944
868
-
Lys
CTT
[ENA]
¢þ
>WENV183076942
OLIW01013640
[OLIW] human gut metagenome; feces
2204
2128
-
Lys
CTT
[ENA]
¢þ
>WENV183574882
OOCI01000083
[OOCI] human gut metagenome; human gut
2630
2706
+
Lys
CTT
[ENA]
¢þ
Identical group No.327733 (9 seq.)
>A171002562
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
121187
121111
-
Lys
CTT
-
¡û
>WENV180663457
OCVV011123144
[OCVV] gut metagenome; gut
1675
1751
+
Lys
CTT
[ENA]
¢þ
>WENV180663458
OCVV011123144
[OCVV] gut metagenome; gut
1675
1751
+
Lys
CTT
[ENA]
¢þ
>WENV182172617
OHMY01024156
[OHMY] human gut metagenome; feces
400
476
+
Lys
CTT
[ENA]
¢þ
>WENV182274703
OHUK01005485
[OHUK] human gut metagenome; feces
2873
2797
-
Lys
CTT
[ENA]
¢þ
>WENV182652278
OJMH01011994
[OJMH] human gut metagenome; feces
2496
2420
-
Lys
CTT
[ENA]
¢þ
>WENV183385156
OLYN01037658
[OLYN] human gut metagenome; feces
232
308
+
Lys
CTT
[ENA]
¢þ
>WENV183424305
OMBG01043309
[OMBG] human gut metagenome; feces
749
825
+
Lys
CTT
[ENA]
¢þ
>WENV183447781
OMCS01032517
[OMCS] human gut metagenome; feces
243
167
-
Lys
CTT
[ENA]
¢þ
Identical group No.338092 (5 seq.)
>A171001377
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
712301
712227
-
Lys
CTT
-
¡û
>A171002868
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
267983
268057
+
Lys
CTT
-
¡û
>W1610000686
ABSD01000048
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
59506
59582
+
Lys
CTT
[ENA]
¡û
>W1610000693
ABSD01000051
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
47277
47201
-
Lys
CTT
[ENA]
¡û
>W1610001708
ADFG01000031
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
10543
10467
-
Lys
CTT
[ENA]
¡û
Identical group No.352468 (3 seq.)
>At1964
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
182802
182875
+
Lys
CTT
[Ensembl]
¡û
>At2032
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
291797
291724
-
Lys
CTT
[Ensembl]
¡û
>W1930037674
QJSM01000010
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
1070
1145
+
Lys
CTT
[ENA]
¡û
Identical group No.372598 (1 seq.)
>A171000313
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1388437
1388363
-
Lys
CTT
-
¡û
Identical group No.373686 (2 seq.)
>At1761
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
670300
670227
-
Lys
CTT
[Ensembl]
¡û
>W1910469082
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
306596
306670
+
Lys
CTT
[ENA]
¡û
Identical group No.399970 (3 seq.)
>A171005735
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1367416
1367490
+
Lys
CTT
-
¡û
>WENV170716996
LSQX01020009
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
19852
19928
+
Lys
CTT
[ENA]
¢þ
>W1610651886
LJKL01000009
Unclassified
Methanomassiliicoccales archaeon RumEn M2 [LJKL]
47326
47250
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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