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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455544 (15 seq.)
>A171002541
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1424355
1424280
-
Phe
GAA
-
¡û
>A171003529
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1633795
1633720
-
Phe
GAA
-
¡û
>WENV180326894
OBKS01226562
[OBKS] human gut metagenome; human gut
170
245
+
Phe
GAA
[ENA]
¢þ
>WENV180676859
OCVV011529922
[OCVV] gut metagenome; gut
182
107
-
Phe
GAA
[ENA]
¢þ
>WENV180676860
OCVV011529922
[OCVV] gut metagenome; gut
182
107
-
Phe
GAA
[ENA]
¢þ
>WENV181607207
OGLM01004644
[OGLM] metagenome; Human gut stool
4481
4556
+
Phe
GAA
[ENA]
¢þ
>WENV181655741
OGOB01000876
[OGOB] metagenome; Human gut stool
7117
7192
+
Phe
GAA
[ENA]
¢þ
>WENV181773014
OGRD01066265
[OGRD] human gut metagenome; faeces
136
211
+
Phe
GAA
[ENA]
¢þ
>WENV182524079
OIWT01000033
[OIWT] human gut metagenome; faeces
87447
87372
-
Phe
GAA
[ENA]
¢þ
>WENV183045804
OLGE01025934
[OLGE] human gut metagenome; faeces
16
91
+
Phe
GAA
[ENA]
¢þ
>WENV183382650
OLYL01007052
[OLYL] human gut metagenome; feces
1393
1468
+
Phe
GAA
[ENA]
¢þ
>WENV183438833
OMCF01007052
[OMCF] human gut metagenome; feces
1393
1468
+
Phe
GAA
[ENA]
¢þ
>WENV183458209
OMDM01002603
[OMDM] human gut metagenome; feces
3726
3801
+
Phe
GAA
[ENA]
¢þ
>WENV183517908
OMNP01024995
[OMNP] human gut metagenome; feces
137
212
+
Phe
GAA
[ENA]
¢þ
>W1610011056
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
342373
342448
+
Phe
GAA
[ENA]
¡û
Identical group No.456290 (8 seq.)
>A171003720
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
97748
97675
-
Phe
GAA
-
¡û
>WENV180470052
OBYM01045948
[OBYM] human gut metagenome; faeces
259
186
-
Phe
GAA
[ENA]
¢þ
>WENV181036522
ODXP01001097
[ODXP] human metagenome; G_DNA_Stool
21928
22001
+
Phe
GAA
[ENA]
¢þ
>WENV181088920
OEBA01007465
[OEBA] human metagenome; G_DNA_Stool
896
823
-
Phe
GAA
[ENA]
¢þ
>WENV182537324
OIXH01005716
[OIXH] human gut metagenome; faeces
235
162
-
Phe
GAA
[ENA]
¢þ
>WENV183039373
OLGB01006235
[OLGB] human gut metagenome; faeces
8551
8624
+
Phe
GAA
[ENA]
¢þ
>WENV183042545
OLGD01005454
[OLGD] human gut metagenome; faeces
235
162
-
Phe
GAA
[ENA]
¢þ
>W1610651870
LJKK01000155
Unclassified
Methanomassiliicoccales archaeon RumEn M1 [LJKK]
13530
13457
-
Phe
GAA
[ENA]
¡û
Identical group No.488104 (26 seq.)
>A171003624
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
938373
938445
+
Phe
GAA
-
¡û
>A171006628
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1798418
1798490
+
Phe
GAA
-
¡û
>A171007761
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
279047
278975
-
Phe
GAA
-
¡û
>A171007798
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
261764
261692
-
Phe
GAA
-
¡û
>W141000060
AADL01001298
Unclassified
mine drainage metagenome Group III [AADL]
893
965
+
Phe
GAA
[ENA]
¡û
>W141000096
AADL01001573
Unclassified
mine drainage metagenome Group III [AADL]
9947
9875
-
Phe
GAA
[ENA]
¡û
>W141000110
AADL01001643
Unclassified
mine drainage metagenome Group III [AADL]
3432
3504
+
Phe
GAA
[ENA]
¡û
>W141000152
AADL01002191
Unclassified
mine drainage metagenome Group III [AADL]
297
369
+
Phe
GAA
[ENA]
¡û
>WENV170013460
AUZX01008961
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
248
176
-
Phe
GAA
[ENA]
¢þ
>At1756
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
490564
490492
-
Phe
GAA
[Ensembl]
¡û
>W1910469086
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
481679
481751
+
Phe
GAA
[ENA]
¡û
>W1910585091
JYHS01000003
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
224436
224364
-
Phe
GAA
[ENA]
¡û
>ENV09002000
ACXJ01005576
Mine drainage metagenome Contig1
298
370
+
Phe
GAA
[ENA]
¡û
>ENV09002138
ACXJ01010336
Mine drainage metagenome Contig1
3148
3076
-
Phe
GAA
[ENA]
¡û
>ENV09002152
ACXJ01010552
Mine drainage metagenome Contig1
1404
1332
-
Phe
GAA
[ENA]
¡û
>ENV09002229
ACXJ01011367
Mine drainage metagenome Contig1
3220
3292
+
Phe
GAA
[ENA]
¡û
>ENV09002314
ACXL01000009
Thermoplasmatales archaeon E-plasma EplasmaContig2057
78818
78746
-
Phe
GAA
[ENA]
¡û
>W1610000068
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
65439
65511
+
Phe
GAA
[ENA]
¡û
>W1610047589
BBDK01000010
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
6254
6182
-
Phe
GAA
[ENA]
¡û
>W1610642306
LJCQ01000236
Unclassified
Acidiplasma aeolicum V [LJCQ]
4201
4273
+
Phe
GAA
[ENA]
¡û
>W1610670462
LKBG01000112
Unclassified
Acidiplasma aeolicum VT [LKBG]
479
407
-
Phe
GAA
[ENA]
¡û
>W1610670507
LKBH01000203
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
779
707
-
Phe
GAA
[ENA]
¡û
>WENV077068
AADL01001298
Acid Mine Drainage microbial communities from Richmond mine
893
968
+
Phe
GAA
[ENA]
>WENV077105
AADL01001573
Acid Mine Drainage microbial communities from Richmond mine
9947
9872
-
Phe
GAA
[ENA]
>WENV077118
AADL01001643
Acid Mine Drainage microbial communities from Richmond mine
3432
3507
+
Phe
GAA
[ENA]
>WENV077160
AADL01002191
Acid Mine Drainage microbial communities from Richmond mine
297
372
+
Phe
GAA
[ENA]
Identical group No.515198 (7 seq.)
>A171006499
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
44131
44206
+
Phe
GAA
-
¡û
>WENV180674141
OCVV011348404
[OCVV] gut metagenome; gut
3
78
+
Phe
GAA
[ENA]
¢þ
>WENV180674142
OCVV011348404
[OCVV] gut metagenome; gut
3
78
+
Phe
GAA
[ENA]
¢þ
>WENV180677221
OCVV011629504
[OCVV] gut metagenome; gut
195
270
+
Phe
GAA
[ENA]
¢þ
>WENV180677222
OCVV011629504
[OCVV] gut metagenome; gut
195
270
+
Phe
GAA
[ENA]
¢þ
>WENV180678609
OCVV012037047
[OCVV] gut metagenome; gut
195
270
+
Phe
GAA
[ENA]
¢þ
>WENV180678610
OCVV012037047
[OCVV] gut metagenome; gut
195
270
+
Phe
GAA
[ENA]
¢þ
Identical group No.526073 (4 seq.)
>A171001363
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1344605
1344678
+
Phe
GAA
-
¡û
>W1610000649
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
177737
177810
+
Phe
GAA
[ENA]
¡û
>W1610000662
ABSD01000032
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
78282
78209
-
Phe
GAA
[ENA]
¡û
>W1610001688
ADFG01000004
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
50995
51068
+
Phe
GAA
[ENA]
¡û
Identical group No.541356 (3 seq.)
>At2009
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1496575
1496503
-
Phe
GAA
[Ensembl]
¡û
>At2029
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
135403
135331
-
Phe
GAA
[Ensembl]
¡û
>W1911681186
QJSM01000041
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
13184
13112
-
Phe
GAA
[ENA]
¡û
Identical group No.551670 (1 seq.)
>A171002878
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1407596
1407523
-
Phe
GAA
-
¡û
Identical group No.647540 (1 seq.)
>A171005737
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1441125
1441050
-
Phe
GAA
-
¡û
Identical group No.720678 (1 seq.)
>A171000299
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1405658
1405730
+
Phe
GAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK