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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241105 (14 seq.)
>A171003538
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1062103
1062028
-
Ile
GAT
-
¡û
>WENV180326284
OBKS01049309
[OBKS] human gut metagenome; human gut
644
719
+
Ile
GAT
[ENA]
¢þ
>WENV180341227
OBLI01096760
[OBLI] pig gut metagenome; faeces
266
341
+
Ile
GAT
[ENA]
¢þ
>WENV181607581
OGLM01013457
[OGLM] metagenome; Human gut stool
3612
3687
+
Ile
GAT
[ENA]
¢þ
>WENV181656018
OGOB01011991
[OGOB] metagenome; Human gut stool
1252
1327
+
Ile
GAT
[ENA]
¢þ
>WENV181772434
OGRD01003471
[OGRD] human gut metagenome; faeces
437
512
+
Ile
GAT
[ENA]
¢þ
>WENV182524460
OIWT01000230
[OIWT] human gut metagenome; faeces
50351
50276
-
Ile
GAT
[ENA]
¢þ
>WENV183045815
OLGE01027262
[OLGE] human gut metagenome; faeces
1761
1836
+
Ile
GAT
[ENA]
¢þ
>WENV183382647
OLYL01006958
[OLYL] human gut metagenome; feces
1951
1876
-
Ile
GAT
[ENA]
¢þ
>WENV183409710
OMAG01005045
[OMAG] human gut metagenome; feces
1246
1171
-
Ile
GAT
[ENA]
¢þ
>WENV183438830
OMCF01006958
[OMCF] human gut metagenome; feces
1951
1876
-
Ile
GAT
[ENA]
¢þ
>WENV183458500
OMDM01019738
[OMDM] human gut metagenome; feces
401
326
-
Ile
GAT
[ENA]
¢þ
>WENV183517555
OMNP01003498
[OMNP] human gut metagenome; feces
2653
2728
+
Ile
GAT
[ENA]
¢þ
>W1610011065
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
914065
914142
+
Ile
GAT
[ENA]
¡û
Identical group No.241224 (10 seq.)
>A171003700
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
850904
850979
+
Ile
GAT
-
¡û
>WENV180470156
OBYM01075401
[OBYM] human gut metagenome; faeces
286
211
-
Ile
GAT
[ENA]
¢þ
>WENV181035827
ODXP01000012
[ODXP] human metagenome; G_DNA_Stool
208881
208956
+
Ile
GAT
[ENA]
¢þ
>WENV181088722
OEBA01004186
[OEBA] human metagenome; G_DNA_Stool
4379
4304
-
Ile
GAT
[ENA]
¢þ
>WENV181702151
OGPH01022237
[OGPH] human gut metagenome; faeces
1295
1220
-
Ile
GAT
[ENA]
¢þ
>WENV182194015
OHPB01062765
[OHPB] human gut metagenome; feces
154
79
-
Ile
GAT
[ENA]
¢þ
>WENV182213077
OHQG01047445
[OHQG] human gut metagenome; feces
68
143
+
Ile
GAT
[ENA]
¢þ
>WENV182536113
OIXH01000186
[OIXH] human gut metagenome; faeces
14146
14223
+
Ile
GAT
[ENA]
¢þ
>WENV183038840
OLGB01001680
[OLGB] human gut metagenome; faeces
17727
17650
-
Ile
GAT
[ENA]
¢þ
>WENV183041117
OLGD01000368
[OLGD] human gut metagenome; faeces
14146
14223
+
Ile
GAT
[ENA]
¢þ
Identical group No.245176 (5 seq.)
>A171007727
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
243735
243809
+
Ile
GAT
-
¡û
>A171007764
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
222990
223064
+
Ile
GAT
-
¡û
>W141000108
AADL01001640
Unclassified
mine drainage metagenome Group III [AADL]
7773
7696
-
Ile
GAT
[ENA]
¡û
>ENV09002211
ACXJ01011262
Mine drainage metagenome Contig1
8812
8735
-
Ile
GAT
[ENA]
¡û
>WENV077116
AADL01001640
Acid Mine Drainage microbial communities from Richmond mine
7773
7696
-
Ile
GAT
[ENA]
Identical group No.245177 (10 seq.)
>A171003619
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
477508
477582
+
Ile
GAT
-
¡û
>A171006623
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1369792
1369866
+
Ile
GAT
-
¡û
>W141000113
AADL01001652
Unclassified
mine drainage metagenome Group III [AADL]
5938
6012
+
Ile
GAT
[ENA]
¡û
>W1910585065
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
343617
343691
+
Ile
GAT
[ENA]
¡û
>W1610000059
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
14656
14730
+
Ile
GAT
[ENA]
¡û
>W1610047600
BBDK01000031
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
5450
5376
-
Ile
GAT
[ENA]
¡û
>W1610642302
LJCQ01000179
Unclassified
Acidiplasma aeolicum V [LJCQ]
7137
7063
-
Ile
GAT
[ENA]
¡û
>W1610670455
LKBG01000078
Unclassified
Acidiplasma aeolicum VT [LKBG]
11875
11949
+
Ile
GAT
[ENA]
¡û
>W1610670493
LKBH01000066
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
1010
936
-
Ile
GAT
[ENA]
¡û
>WENV077121
AADL01001652
Acid Mine Drainage microbial communities from Richmond mine
5938
6015
+
Ile
GAT
[ENA]
Identical group No.248831 (5 seq.)
>A171006514
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1449929
1450004
+
Ile
GAT
-
¡û
>WENV180658389
OCVV010758386
[OCVV] gut metagenome; gut
3304
3378
+
Ile
GAT
[ENA]
¢þ
>WENV180658390
OCVV010758386
[OCVV] gut metagenome; gut
3304
3378
+
Ile
GAT
[ENA]
¢þ
>WENV180666297
OCVV011209311
[OCVV] gut metagenome; gut
1365
1440
+
Ile
GAT
[ENA]
¢þ
>WENV180666298
OCVV011209311
[OCVV] gut metagenome; gut
1365
1440
+
Ile
GAT
[ENA]
¢þ
Identical group No.253200 (3 seq.)
>At1990
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
341284
341210
-
Ile
GAT
[Ensembl]
¡û
>At2037
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
433376
433302
-
Ile
GAT
[Ensembl]
¡û
>W1911681161
QJSM01000017
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
8903
8829
-
Ile
GAT
[ENA]
¡û
Identical group No.254678 (2 seq.)
>A178000136
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
797943
797819
-
Ile
GAT
-
¡û
>A178000303
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
157185
157303
+
Ile
GAT
-
¡û
Identical group No.256438 (1 seq.)
>A171000320
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1337609
1337535
-
Ile
GAT
-
¡û
Identical group No.256458 (1 seq.)
>A171002551
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
951000
950923
-
Ile
GAT
-
¡û
Identical group No.256675 (1 seq.)
>At1750
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
169699
169625
-
Ile
GAT
[Ensembl]
¡û
Identical group No.269526 (1 seq.)
>A171005723
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
664293
664368
+
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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