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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GCA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.633797 (2 seq.)
>WENV180266772
OBEQ011786520
[OBEQ] groundwater metagenome; groundwater
1546
1474
-
Cys
GCA
[ENA]
¢þ
>C151068565
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
24533
24461
-
Cys
GCA
-
¡û
Identical group No.674651 (5 seq.)
>A171007737
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
865168
865240
+
Pseudo
GCA
-
¡û
>A171007774
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
867628
867699
+
Pseudo
GCA
-
¡û
>W141000140
AADL01001978
Unclassified
mine drainage metagenome Group III [AADL]
2625
2554
-
Pseudo
GCA
[ENA]
¡û
>ENV09002127
ACXJ01010171
Mine drainage metagenome Contig1
2541
2612
+
Pseudo
GCA
[ENA]
¡û
>WENV077148
AADL01001978
Acid Mine Drainage microbial communities from Richmond mine
2625
2551
-
Cys
GCA
[ENA]
Identical group No.697562 (4 seq.)
>A171001364
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1408663
1408734
+
Cys
GCA
-
¡û
>W1610000650
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
240112
240183
+
Cys
GCA
[ENA]
¡û
>W1610000663
ABSD01000032
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
14224
14153
-
Cys
GCA
[ENA]
¡û
>W1610001692
ADFG01000009
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
8890
8961
+
Cys
GCA
[ENA]
¡û
Identical group No.706841 (1 seq.)
>At2024
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1248634
1248705
+
Cys
GCA
[Ensembl]
¡û
Identical group No.713254 (1 seq.)
>A171002884
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
932239
932167
-
Cys
GCA
-
¡û
Identical group No.720679 (1 seq.)
>A171000318
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1340333
1340262
-
Cys
GCA
-
¡û
Identical group No.720687 (1 seq.)
>A171002552
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
908370
908296
-
Cys
GCA
-
¡û
Identical group No.721440 (2 seq.)
>At1740
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
811492
811563
+
Cys
GCA
[Ensembl]
¡û
>W1910469089
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
165785
165714
-
Cys
GCA
[ENA]
¡û
Identical group No.732401 (2 seq.)
>At2002
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1192997
1192926
-
Cys
GCA
[Ensembl]
¡û
>W1911681177
QJSM01000031
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
3320
3248
-
Cys
GCA
[ENA]
¡û
Identical group No.780382 (14 seq.)
>A171003540
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
692628
692557
-
Cys
GCA
-
¡û
>WENV180325773
OBKS01009891
[OBKS] human gut metagenome; human gut
643
572
-
Cys
GCA
[ENA]
¢þ
>WENV180341557
OBLI01159338
[OBLI] pig gut metagenome; faeces
374
303
-
Cys
GCA
[ENA]
¢þ
>WENV181606657
OGLM01000690
[OGLM] metagenome; Human gut stool
24199
24128
-
Cys
GCA
[ENA]
¢þ
>WENV181655769
OGOB01001058
[OGOB] metagenome; Human gut stool
1248
1319
+
Cys
GCA
[ENA]
¢þ
>WENV181772645
OGRD01009815
[OGRD] human gut metagenome; faeces
1675
1746
+
Cys
GCA
[ENA]
¢þ
>WENV182524240
OIWT01000090
[OIWT] human gut metagenome; faeces
104502
104573
+
Cys
GCA
[ENA]
¢þ
>WENV183045371
OLGE01009787
[OLGE] human gut metagenome; faeces
2613
2684
+
Cys
GCA
[ENA]
¢þ
>WENV183382676
OLYL01008544
[OLYL] human gut metagenome; feces
657
728
+
Cys
GCA
[ENA]
¢þ
>WENV183410080
OMAG01054645
[OMAG] human gut metagenome; feces
293
222
-
Cys
GCA
[ENA]
¢þ
>WENV183438859
OMCF01008544
[OMCF] human gut metagenome; feces
657
728
+
Cys
GCA
[ENA]
¢þ
>WENV183458538
OMDM01022496
[OMDM] human gut metagenome; feces
214
285
+
Cys
GCA
[ENA]
¢þ
>WENV183518027
OMNP01047870
[OMNP] human gut metagenome; feces
14
85
+
Cys
GCA
[ENA]
¢þ
>W1610011042
AMSE01000002
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
175877
175948
+
Cys
GCA
[ENA]
¡û
Identical group No.780559 (1 seq.)
>A178000376
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
868794
868890
+
Cys
GCA
-
¡û
Identical group No.795938 (3 seq.)
>A171006513
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1090296
1090369
+
Cys
GCA
-
¡û
>WENV180659765
OCVV010882242
[OCVV] gut metagenome; gut
304
377
+
Cys
GCA
[ENA]
¢þ
>WENV180659766
OCVV010882242
[OCVV] gut metagenome; gut
304
377
+
Cys
GCA
[ENA]
¢þ
Identical group No.833896 (1 seq.)
>CL171100015
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
1187101
1186944
-
Cys
GCA
-
¡û
Identical group No.835559 (1 seq.)
>A171005722
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
626742
626815
+
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK