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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GTG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274413 (10 seq.)
>A171003543
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
351432
351358
-
His
GTG
-
¡û
>WENV180326057
OBKS01023588
[OBKS] human gut metagenome; human gut
450
376
-
His
GTG
[ENA]
¢þ
>WENV181607136
OGLM01003821
[OGLM] metagenome; Human gut stool
10313
10239
-
His
GTG
[ENA]
¢þ
>WENV181655972
OGOB01007645
[OGOB] metagenome; Human gut stool
1108
1034
-
His
GTG
[ENA]
¢þ
>WENV182524634
OIWT01000408
[OIWT] human gut metagenome; faeces
60686
60612
-
His
GTG
[ENA]
¢þ
>WENV183382730
OLYL01011240
[OLYL] human gut metagenome; feces
29
103
+
His
GTG
[ENA]
¢þ
>WENV183409855
OMAG01012474
[OMAG] human gut metagenome; feces
1132
1206
+
His
GTG
[ENA]
¢þ
>WENV183438913
OMCF01011240
[OMCF] human gut metagenome; feces
29
103
+
His
GTG
[ENA]
¢þ
>W1610011046
AMSE01000004
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
51596
51670
+
His
GTG
[ENA]
¡û
>W1610799769
LOPS01000047
Unclassified
Candidatus Methanomethylophilus sp. 1R26 [LOPS]
5641
5715
+
His
GTG
[ENA]
¡û
Identical group No.328186 (3 seq.)
>A171006515
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1490763
1490837
+
His
GTG
-
¡û
>WENV180671019
OCVV011310308
[OCVV] gut metagenome; gut
225
151
-
His
GTG
[ENA]
¢þ
>WENV180671020
OCVV011310308
[OCVV] gut metagenome; gut
225
151
-
His
GTG
[ENA]
¢þ
Identical group No.372630 (1 seq.)
>A171002557
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
408288
408213
-
His
GTG
-
¡û
Identical group No.446341 (1 seq.)
>A171005747
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
198056
197980
-
His
GTG
-
¡û
Identical group No.456280 (9 seq.)
>A171003694
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
356902
356976
+
His
GTG
-
¡û
>WENV180223367
OBBG01007351
[OBBG] human gut metagenome; human gut
876
950
+
His
GTG
[ENA]
¢þ
>WENV180620687
OCQB01228111
[OCQB] human gut metagenome; human gut
204
130
-
His
GTG
[ENA]
¢þ
>WENV181035959
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
76720
76794
+
His
GTG
[ENA]
¢þ
>WENV181088820
OEBA01005746
[OEBA] human metagenome; G_DNA_Stool
4246
4172
-
His
GTG
[ENA]
¢þ
>WENV181702097
OGPH01017748
[OGPH] human gut metagenome; faeces
1527
1601
+
His
GTG
[ENA]
¢þ
>WENV182536311
OIXH01000420
[OIXH] human gut metagenome; faeces
30837
30763
-
His
GTG
[ENA]
¢þ
>WENV183038617
OLGB01000850
[OLGB] human gut metagenome; faeces
30320
30246
-
His
GTG
[ENA]
¢þ
>WENV183041310
OLGD01000561
[OLGD] human gut metagenome; faeces
30837
30763
-
His
GTG
[ENA]
¢þ
Identical group No.563622 (1 seq.)
>A171000295
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1340716
1340788
+
His
GTG
-
¡û
Identical group No.564833 (2 seq.)
>At1763
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
737083
737011
-
His
GTG
[Ensembl]
¡û
>W1910469081
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
239813
239886
+
His
GTG
[ENA]
¡û
Identical group No.674646 (7 seq.)
>A171003634
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1146816
1146744
-
His
GTG
-
¡û
>A171006638
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
174406
174334
-
His
GTG
-
¡û
>W141000045
AADL01001089
Unclassified
mine drainage metagenome Group III [AADL]
103
175
+
Pseudo
GTG
[ENA]
¡û
>W141000076
AADL01001501
Unclassified
mine drainage metagenome Group III [AADL]
40106
40034
-
Pseudo
GTG
[ENA]
¡û
>W1610000071
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
273882
273810
-
Pseudo
GTG
[ENA]
¡û
>WENV077053
AADL01001089
Acid Mine Drainage microbial communities from Richmond mine
102
178
+
His
GTG
[ENA]
>WENV077086
AADL01001501
Acid Mine Drainage microbial communities from Richmond mine
40107
40031
-
His
GTG
[ENA]
Identical group No.674652 (6 seq.)
>A171007734
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
690815
690887
+
His
GTG
-
¡û
>A171007771
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
695568
695640
+
His
GTG
-
¡û
>W141000146
AADL01002065
Unclassified
mine drainage metagenome Group III [AADL]
3265
3193
-
Pseudo
GTG
[ENA]
¡û
>ENV09001953
ACXJ01000690
Mine drainage metagenome Contig1
1603
1531
-
Pseudo
GTG
[ENA]
¡û
>ENV09002150
ACXJ01010523
Mine drainage metagenome Contig1
156
84
-
Pseudo
GTG
[ENA]
¡û
>WENV077153
AADL01002065
Acid Mine Drainage microbial communities from Richmond mine
3266
3190
-
His
GTG
[ENA]
Identical group No.706840 (2 seq.)
>At1976
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1054826
1054897
+
His
GTG
[Ensembl]
¡û
>At2021
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1183058
1183129
+
His
GTG
[Ensembl]
¡û
Identical group No.713253 (1 seq.)
>A171002875
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1201356
1201428
+
His
GTG
-
¡û
Identical group No.734352 (1 seq.)
>A179000139
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1181314
1181193
-
His
GTG
-
¡û
Identical group No.770979 (1 seq.)
>C151068546
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
710715
710788
+
His
GTG
-
¡û
Identical group No.776187 (1 seq.)
>CL172000016
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
658787
658700
-
His
GTG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK