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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GTT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338085 (4 seq.)
>A171001361
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1148825
1148899
+
Asn
GTT
-
¡û
>W1610000639
ABSD01000005
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
81919
81993
+
Asn
GTT
[ENA]
¡û
>W1610000666
ABSD01000035
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
79835
79909
+
Asn
GTT
[ENA]
¡û
>W1610001702
ADFG01000017
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
15985
16059
+
Asn
GTT
[ENA]
¡û
Identical group No.361492 (1 seq.)
>A178000310
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1238873
1238755
-
Asn
GTT
-
¡û
Identical group No.372602 (1 seq.)
>A171000325
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1074572
1074498
-
Asn
GTT
-
¡û
Identical group No.455553 (14 seq.)
>A171003526
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1626137
1626212
+
Asn
GTT
-
¡û
>A171006536
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
51311
51236
-
Asn
GTT
-
¡û
>WENV180666715
OCVV011219642
[OCVV] gut metagenome; gut
234
159
-
Asn
GTT
[ENA]
¢þ
>WENV180666716
OCVV011219642
[OCVV] gut metagenome; gut
234
159
-
Asn
GTT
[ENA]
¢þ
>WENV180668417
OCVV011258448
[OCVV] gut metagenome; gut
3455
3530
+
Asn
GTT
[ENA]
¢þ
>WENV180668418
OCVV011258448
[OCVV] gut metagenome; gut
3455
3530
+
Asn
GTT
[ENA]
¢þ
>WENV181607423
OGLM01008840
[OGLM] metagenome; Human gut stool
3355
3430
+
Asn
GTT
[ENA]
¢þ
>WENV181655887
OGOB01003277
[OGOB] metagenome; Human gut stool
2400
2325
-
Asn
GTT
[ENA]
¢þ
>WENV181772344
OGRD01001722
[OGRD] human gut metagenome; faeces
7291
7216
-
Asn
GTT
[ENA]
¢þ
>WENV182524076
OIWT01000033
[OIWT] human gut metagenome; faeces
79789
79864
+
Asn
GTT
[ENA]
¢þ
>WENV183045127
OLGE01005437
[OLGE] human gut metagenome; faeces
4937
5012
+
Asn
GTT
[ENA]
¢þ
>WENV183409905
OMAG01016043
[OMAG] human gut metagenome; feces
1048
1123
+
Asn
GTT
[ENA]
¢þ
>WENV183517855
OMNP01021472
[OMNP] human gut metagenome; feces
939
864
-
Asn
GTT
[ENA]
¢þ
>W1610011075
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
350031
349956
-
Asn
GTT
[ENA]
¡û
Identical group No.456313 (1 seq.)
>A178000377
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1766986
1767083
+
Asn
GTT
-
¡û
Identical group No.488099 (9 seq.)
>A171003640
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
624698
624626
-
Asn
GTT
-
¡û
>A171006632
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1489141
1489069
-
Asn
GTT
-
¡û
>W141000048
AADL01001092
Unclassified
mine drainage metagenome Group III [AADL]
8499
8571
+
Asn
GTT
[ENA]
¡û
>W141000132
AADL01001881
Unclassified
mine drainage metagenome Group III [AADL]
1170
1098
-
Asn
GTT
[ENA]
¡û
>W141000156
AADL01002346
Unclassified
mine drainage metagenome Group III [AADL]
519
591
+
Asn
GTT
[ENA]
¡û
>W1610000063
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
161856
161784
-
Asn
GTT
[ENA]
¡û
>WENV077056
AADL01001092
Acid Mine Drainage microbial communities from Richmond mine
8499
8574
+
Asn
GTT
[ENA]
>WENV077141
AADL01001881
Acid Mine Drainage microbial communities from Richmond mine
1170
1095
-
Asn
GTT
[ENA]
>WENV077164
AADL01002346
Acid Mine Drainage microbial communities from Richmond mine
519
594
+
Asn
GTT
[ENA]
Identical group No.488112 (5 seq.)
>A171007740
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1194159
1194231
+
Asn
GTT
-
¡û
>A171007777
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1196777
1196849
+
Asn
GTT
-
¡û
>W141000127
AADL01001785
Unclassified
mine drainage metagenome Group III [AADL]
1496
1424
-
Asn
GTT
[ENA]
¡û
>ENV09002218
ACXJ01011277
Mine drainage metagenome Contig1
286
358
+
Asn
GTT
[ENA]
¡û
>WENV077136
AADL01001785
Acid Mine Drainage microbial communities from Richmond mine
1496
1421
-
Asn
GTT
[ENA]
Identical group No.541361 (3 seq.)
>At1970
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
826046
826118
+
Asn
GTT
[Ensembl]
¡û
>At2042
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
841252
841180
-
Asn
GTT
[Ensembl]
¡û
>W1911681166
QJSM01000020
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
172783
172857
+
Asn
GTT
[ENA]
¡û
Identical group No.563642 (1 seq.)
>A171002538
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1416890
1416965
+
Asn
GTT
-
¡û
Identical group No.564834 (2 seq.)
>At1766
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
781124
781052
-
Asn
GTT
[Ensembl]
¡û
>W1910469079
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
195858
195931
+
Asn
GTT
[ENA]
¡û
Identical group No.612943 (2 seq.)
>A17A001862
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1165175
1165280
+
Asn
GTT
-
¡û
>A17A001864
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1168627
1168732
+
Asn
GTT
-
¡û
Identical group No.639792 (1 seq.)
>C151068553
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
397311
397238
-
Asn
GTT
-
¡û
Identical group No.647541 (1 seq.)
>A171005738
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1418787
1418712
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK