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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TCG
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241104 (12 seq.)
>A171003533
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1579140
1579063
-
Arg
TCG
-
¡û
>WENV180539411
OCHP01016393
[OCHP] human gut metagenome; human gut
428
505
+
Arg
TCG
[ENA]
¢þ
>WENV180628218
OCQO01073951
[OCQO] human gut metagenome; human gut
501
424
-
Arg
TCG
[ENA]
¢þ
>WENV181606835
OGLM01001369
[OGLM] metagenome; Human gut stool
15680
15603
-
Arg
TCG
[ENA]
¢þ
>WENV181655724
OGOB01000767
[OGOB] metagenome; Human gut stool
4319
4242
-
Arg
TCG
[ENA]
¢þ
>WENV182524083
OIWT01000033
[OIWT] human gut metagenome; faeces
32809
32732
-
Arg
TCG
[ENA]
¢þ
>WENV183045847
OLGE01029871
[OLGE] human gut metagenome; faeces
377
300
-
Arg
TCG
[ENA]
¢þ
>WENV183382844
OLYL01023137
[OLYL] human gut metagenome; feces
611
688
+
Arg
TCG
[ENA]
¢þ
>WENV183409963
OMAG01024364
[OMAG] human gut metagenome; feces
426
503
+
Arg
TCG
[ENA]
¢þ
>WENV183439027
OMCF01023137
[OMCF] human gut metagenome; feces
611
688
+
Arg
TCG
[ENA]
¢þ
>WENV183458414
OMDM01011888
[OMDM] human gut metagenome; feces
1400
1323
-
Arg
TCG
[ENA]
¢þ
>W1610011060
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
397028
397105
+
Arg
TCG
[ENA]
¡û
Identical group No.241220 (9 seq.)
>A171003689
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
161798
161873
+
Arg
TCG
-
¡û
>WENV180620217
OCQB01042024
[OCQB] human gut metagenome; human gut
297
372
+
Arg
TCG
[ENA]
¢þ
>WENV180963481
ODUN01204409
[ODUN] human metagenome; G_DNA_Stool
139
214
+
Arg
TCG
[ENA]
¢þ
>WENV181036828
ODXP01003579
[ODXP] human metagenome; G_DNA_Stool
5931
6006
+
Arg
TCG
[ENA]
¢þ
>WENV181088793
OEBA01005164
[OEBA] human metagenome; G_DNA_Stool
6372
6447
+
Arg
TCG
[ENA]
¢þ
>WENV181702190
OGPH01026681
[OGPH] human gut metagenome; faeces
717
792
+
Arg
TCG
[ENA]
¢þ
>WENV182537558
OIXH01010333
[OIXH] human gut metagenome; faeces
5149
5224
+
Arg
TCG
[ENA]
¢þ
>WENV183039599
OLGB01010256
[OLGB] human gut metagenome; faeces
5149
5224
+
Arg
TCG
[ENA]
¢þ
>WENV183042750
OLGD01008413
[OLGD] human gut metagenome; faeces
5149
5224
+
Arg
TCG
[ENA]
¢þ
Identical group No.256441 (1 seq.)
>A171000328
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
48740
48666
-
Arg
TCG
-
¡û
Identical group No.256457 (1 seq.)
>A171002545
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1373557
1373481
-
Arg
TCG
-
¡û
Identical group No.304176 (5 seq.)
>A171003629
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1780401
1780474
+
Arg
TCG
-
¡û
>A171006617
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
741971
742044
+
Arg
TCG
-
¡û
>W141000084
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
5877
5804
-
Arg
TCG
[ENA]
¡û
>W1610000080
AABC05000015
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
43997
44070
+
Arg
TCG
[ENA]
¡û
>WENV077090
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
5877
5801
-
Arg
TCG
[ENA]
Identical group No.304178 (3 seq.)
>A171007753
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1309941
1309868
-
Arg
TCG
-
¡û
>W141000114
AADL01001657
Unclassified
mine drainage metagenome Group III [AADL]
2088
2161
+
Arg
TCG
[ENA]
¡û
>WENV077122
AADL01001657
Acid Mine Drainage microbial communities from Richmond mine
2088
2164
+
Arg
TCG
[ENA]
Identical group No.328360 (3 seq.)
>A171006503
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
95771
95845
+
Arg
TCG
-
¡û
>WENV180673773
OCVV011343527
[OCVV] gut metagenome; gut
652
726
+
Arg
TCG
[ENA]
¢þ
>WENV180673774
OCVV011343527
[OCVV] gut metagenome; gut
652
726
+
Arg
TCG
[ENA]
¢þ
Identical group No.338089 (4 seq.)
>A171001367
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1440858
1440784
-
Arg
TCG
-
¡û
>W1610000652
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
296671
296597
-
Arg
TCG
[ENA]
¡û
>W1610000659
ABSD01000031
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
6241
6315
+
Arg
TCG
[ENA]
¡û
>W1610001694
ADFG01000009
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
41083
41009
-
Arg
TCG
[ENA]
¡û
Identical group No.352071 (1 seq.)
>At2283
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
741217
741139
-
Arg
TCG
[Ensembl]
¡û
Identical group No.361462 (1 seq.)
>A171002872
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1009947
1010021
+
Arg
TCG
-
¡û
Identical group No.373684 (1 seq.)
>At1751
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
201417
201344
-
Arg
TCG
[Ensembl]
¡û
Identical group No.408721 (1 seq.)
>At1973
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
884378
884451
+
Arg
TCG
[Ensembl]
¡û
Identical group No.415937 (1 seq.)
>A171007790
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1311522
1311449
-
Arg
TCG
-
¡û
Identical group No.439532 (1 seq.)
>C151068550
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
1075221
1075294
+
Arg
TCG
-
¡û
Identical group No.647532 (1 seq.)
>A171005714
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
22825
22898
+
Arg
TCG
-
¡û
Identical group No.775531 (1 seq.)
>C151068564
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
47140
47067
-
Arg
TCG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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