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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TGG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241273 (1 seq.)
>A173000157
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
530905
530828
-
Pro
TGG
-
¡û
Identical group No.268664 (1 seq.)
>CL172100014
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
66990
67234
+
Pro
TGG
-
¡û
Identical group No.361490 (2 seq.)
>A178000307
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
569986
569866
-
Pro
TGG
-
¡û
>A179000136
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
380193
380313
+
Pro
TGG
-
¡û
Identical group No.372597 (1 seq.)
>A171000307
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1589121
1589048
-
Pro
TGG
-
¡û
Identical group No.455551 (11 seq.)
>A171003523
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1432516
1432589
+
Pro
TGG
-
¡û
>WENV180326593
OBKS01112228
[OBKS] human gut metagenome; human gut
311
384
+
Pro
TGG
[ENA]
¢þ
>WENV180330593
OBKV01115624
[OBKV] human gut metagenome; human gut
199
126
-
Pro
TGG
[ENA]
¢þ
>WENV181606475
OGLM01000344
[OGLM] metagenome; Human gut stool
16465
16538
+
Pro
TGG
[ENA]
¢þ
>WENV181655567
OGOB01000128
[OGOB] metagenome; Human gut stool
52247
52320
+
Pro
TGG
[ENA]
¢þ
>WENV181772377
OGRD01002055
[OGRD] human gut metagenome; faeces
3469
3542
+
Pro
TGG
[ENA]
¢þ
>WENV182524230
OIWT01000083
[OIWT] human gut metagenome; faeces
19552
19625
+
Pro
TGG
[ENA]
¢þ
>WENV183045813
OLGE01026828
[OLGE] human gut metagenome; faeces
1058
1131
+
Pro
TGG
[ENA]
¢þ
>WENV183410001
OMAG01031429
[OMAG] human gut metagenome; feces
840
767
-
Pro
TGG
[ENA]
¢þ
>WENV183458588
OMDM01032641
[OMDM] human gut metagenome; feces
175
248
+
Pro
TGG
[ENA]
¢þ
>W1610011072
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
543652
543579
-
Pro
TGG
[ENA]
¡û
Identical group No.507993 (2 seq.)
>A173000142
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1015352
1015424
+
Pro
TGG
-
¡û
>A173000299
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
46208
46280
+
Pro
TGG
-
¡û
Identical group No.514885 (5 seq.)
>A171006533
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
195073
194998
-
Pro
TGG
-
¡û
>WENV180669705
OCVV011286098
[OCVV] gut metagenome; gut
809
884
+
Pro
TGG
[ENA]
¢þ
>WENV180669706
OCVV011286098
[OCVV] gut metagenome; gut
809
884
+
Pro
TGG
[ENA]
¢þ
>WENV180681567
OCVV012781806
[OCVV] gut metagenome; gut
138
213
+
Pro
TGG
[ENA]
¢þ
>WENV180681568
OCVV012781806
[OCVV] gut metagenome; gut
138
213
+
Pro
TGG
[ENA]
¢þ
Identical group No.541350 (2 seq.)
>At1981
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1349852
1349924
+
Pro
TGG
[Ensembl]
¡û
>At2012
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
325114
325186
+
Pro
TGG
[Ensembl]
¡û
Identical group No.563640 (1 seq.)
>A171002535
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1254032
1254106
+
Pro
TGG
-
¡û
Identical group No.564831 (1 seq.)
>At1759
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
641402
641330
-
Pro
TGG
[Ensembl]
¡û
Identical group No.612948 (2 seq.)
>A173000372
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1781264
1781190
-
Pro
TGG
-
¡û
>A173000378
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1726056
1725982
-
Pro
TGG
-
¡û
Identical group No.647546 (1 seq.)
>A171005750
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
60672
60599
-
Pro
TGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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