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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181520 (5 seq.)
>WENV170783506
MAAC01017480
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
13997
13913
-
Leu
CAA
[ENA]
¢þ
>WENV170826470
MDSY01111310
[MDSY] marine metagenome; seawater
1047
965
-
Leu
CAA
[ENA]
¢þ
>WENV080364
ABCO01000001
Unidentified eubacterium SCB49
352119
352203
+
Leu
CAA
[ENA]
>W1710514549
FNBA01000001
Bacteroidota
Ulvibacter litoralis [FNBA]
1121909
1121993
+
Leu
CAA
[ENA]
¡û
>W1710570859
FOVL01000001
Bacteroidota
Salegentibacter flavus [FOVL]
49883
49801
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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