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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467484 (21 seq.)
>WENV180109329
OAPJ01081276
[OAPJ] marine metagenome; ENVO 00002150
191
118
-
Gly
GCC
[ENA]
¢þ
>WENV180383092
OBOU01000619
[OBOU] marine metagenome; ENV:00002010
2520
2593
+
Gly
GCC
[ENA]
¢þ
>WENV180383663
OBOV01005177
[OBOV] marine metagenome; ENV:00002010
891
964
+
Gly
GCC
[ENA]
¢þ
>WENV180396522
OBPV01013493
[OBPV] marine metagenome; ENVO:00002010
318
391
+
Gly
GCC
[ENA]
¢þ
>WENV180586600
OCOM01148862
[OCOM] marine metagenome; seawater
93
166
+
Gly
GCC
[ENA]
¢þ
>WENV182562111
OJDY01010456
[OJDY] seawater metagenome; Sea water
142
69
-
Gly
GCC
[ENA]
¢þ
>WENV182562801
OJEA01002605
[OJEA] seawater metagenome; Sea water
1882
1955
+
Gly
GCC
[ENA]
¢þ
>WENV182564097
OJEE01000119
[OJEE] seawater metagenome; Sea water
15530
15457
-
Gly
GCC
[ENA]
¢þ
>WENV182569275
OJEY01006733
[OJEY] seawater metagenome; Sea water
189
116
-
Gly
GCC
[ENA]
¢þ
>WENV183615116
OOEA01062321
[OOEA] marine metagenome; sea ice
237
164
-
Gly
GCC
[ENA]
¢þ
>WENV183616940
OOEE01015652
[OOEE] marine metagenome; sea ice
603
530
-
Gly
GCC
[ENA]
¢þ
>WENV183619843
OOFQ01061082
[OOFQ] marine metagenome; seawater
206
279
+
Gly
GCC
[ENA]
¢þ
>WENV183619985
OOFR01001642
[OOFR] marine metagenome; seawater
376
303
-
Gly
GCC
[ENA]
¢þ
>WENV183628109
OOGM01018363
[OOGM] marine metagenome; sea ice
558
631
+
Gly
GCC
[ENA]
¢þ
>WENV170275008
CERM01057962
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
174
99
-
Gly
GCC
[ENA]
¢þ
>WENV170534996
CEWP01014943
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1525
1450
-
Gly
GCC
[ENA]
¢þ
>WENV170568484
FLMP01044045
[FLMP] seawater metagenome; seawater
309
384
+
Gly
GCC
[ENA]
¢þ
>WENV170618989
FUWD012995218
[FUWD] metagenome; unknown
199
274
+
Gly
GCC
[ENA]
¢þ
>WENV170626630
FUWD013227458
[FUWD] metagenome; unknown
1794
1869
+
Gly
GCC
[ENA]
¢þ
>WENV171002680
NHNJ01133280
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
84
9
-
Gly
GCC
[ENA]
¢þ
>WENV080367
ABCO01000001
Unidentified eubacterium SCB49
575987
575912
-
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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