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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = GTG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299826 (5 seq.)
>w013021
AAMZ01000001
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
11302
11224
-
His
GTG
[ENA]
¡û
>C151048563
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
718761
718835
+
His
GTG
[Ensembl]
¡û
>W1511360763
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
218864
218790
-
His
GTG
[ENA]
¡û
>C161083525
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
2650827
2650901
+
His
GTG
-
¡û
>WENV080375
ABCO01000005
Unidentified eubacterium SCB49
102242
102320
+
His
GTG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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