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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74696 (9 seq.)
>WENV182560899
OJDV01000171
[OJDV] seawater metagenome; Sea water
6908
6822
-
Leu
TAA
[ENA]
¢þ
>WENV183056406
OLHJ01000011
[OLHJ] seawater metagenome; Sea water
35693
35607
-
Leu
TAA
[ENA]
¢þ
>WENV183064873
OLII01001996
[OLII] seawater metagenome; Sea water
5606
5692
+
Leu
TAA
[ENA]
¢þ
>WENV170130819
CENR01030222
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
240
+
Leu
TAA
[ENA]
¢þ
>WENV170193841
CEPI01047755
[CEPI] marine metagenome genome assembly TARA_041_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
204
116
-
Leu
TAA
[ENA]
¢þ
>WENV170663519
JYMV01006504
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
277629
277541
-
Leu
TAA
[ENA]
¢þ
>WENV170783396
MAAC01016519
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
16595
16509
-
Leu
TAA
[ENA]
¢þ
>W1810784275
QRAO01000011
Bacteroidota
Marinirhabdus gelatinilytica DSM 101478 [QRAO]
6269
6183
-
Leu
TAA
[ENA]
¡û
>WENV080366
ABCO01000001
Unidentified eubacterium SCB49
575794
575704
-
Leu
TAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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