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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = TCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299827 (6 seq.)
>WENV180102856
OAOZ01034494
[OAOZ] marine metagenome; ENVO:00002010
248
322
+
Arg
TCG
[ENA]
¢þ
>WENV182546683
OJBP01001044
[OJBP] seawater metagenome; Sea water
8059
8133
+
Arg
TCG
[ENA]
¢þ
>WENV170606713
FUWD010716399
[FUWD] metagenome; unknown
167
93
-
Arg
TCG
[ENA]
¢þ
>C181175206
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
516861
516787
-
Arg
TCG
-
¡û
>C11111607
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2144135
2144211
+
Arg
TCG
[Ensembl]
¡û
>WENV080380
ABCO01000006
Unidentified eubacterium SCB49
61955
62033
+
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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