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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = TCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.281343 (56 seq.)
>W1711284799
LZRN01000006
Bacteroidota
Gelidibacter algens [LZRN]
147339
147265
-
Arg
TCT
[ENA]
¡û
>W1711284851
LZRO01000029
Bacteroidota
Bizionia sp. APA-3 [LZRO]
35299
35373
+
Arg
TCT
[ENA]
¡û
>W131229893
AUHD01000009
Bacteroidota
Gelidibacter mesophilus DSM 14095 [AUHD]
30900
30974
+
Arg
TCT
[ENA]
¡û
>WENV180383082
OBOU01000411
[OBOU] marine metagenome; ENV:00002010
3873
3947
+
Arg
TCT
[ENA]
¢þ
>WENV180383905
OBOV01072891
[OBOV] marine metagenome; ENV:00002010
202
128
-
Arg
TCT
[ENA]
¢þ
>WENV180396930
OBPW01041685
[OBPW] marine metagenome; seawater
216
290
+
Arg
TCT
[ENA]
¢þ
>WENV180583791
OCNB01216802
[OCNB] metagenome; diffuse fluid
76
150
+
Arg
TCT
[ENA]
¢þ
>WENV181306690
OFIM01000681
[OFIM] marine metagenome; seawater
1945
1871
-
Arg
TCT
[ENA]
¢þ
>WENV181316060
OFJS01002450
[OFJS] marine metagenome; sea ice
610
684
+
Arg
TCT
[ENA]
¢þ
>WENV181325787
OFLJ01026024
[OFLJ] seawater metagenome; seawater
351
277
-
Arg
TCT
[ENA]
¢þ
>WENV181391532
OFRT01017590
[OFRT] seawater metagenome; seawater
416
490
+
Arg
TCT
[ENA]
¢þ
>WENV181392877
OFRX01012203
[OFRX] seawater metagenome; seawater
115
189
+
Arg
TCT
[ENA]
¢þ
>WENV182558155
OJDL01008270
[OJDL] seawater metagenome; Sea water
1619
1545
-
Arg
TCT
[ENA]
¢þ
>WENV182561090
OJDV01004711
[OJDV] seawater metagenome; Sea water
1323
1249
-
Arg
TCT
[ENA]
¢þ
>WENV182562762
OJEA01001360
[OJEA] seawater metagenome; Sea water
114
40
-
Arg
TCT
[ENA]
¢þ
>WENV182591654
OJIO01001269
[OJIO] seawater metagenome; Sea water
1867
1941
+
Arg
TCT
[ENA]
¢þ
>W141276306
JADR01000001
Bacteroidota
Olleya marilimosa CAM030 [JADR]
773616
773542
-
Arg
TCT
[ENA]
¡û
>WENV183056714
OLHJ01006385
[OLHJ] seawater metagenome; Sea water
2173
2247
+
Arg
TCT
[ENA]
¢þ
>WENV183064917
OLII01003628
[OLII] seawater metagenome; Sea water
3002
3076
+
Arg
TCT
[ENA]
¢þ
>WENV183617392
OOEE01222325
[OOEE] marine metagenome; sea ice
110
184
+
Arg
TCT
[ENA]
¢þ
>WENV183617736
OOEG01069785
[OOEG] marine metagenome; sea ice
327
253
-
Arg
TCT
[ENA]
¢þ
>WENV183619035
OOFP01017471
[OOFP] marine metagenome; seawater
416
490
+
Arg
TCT
[ENA]
¢þ
>WENV183619644
OOFQ01026584
[OOFQ] marine metagenome; seawater
351
277
-
Arg
TCT
[ENA]
¢þ
>WENV183620286
OOFR01023079
[OOFR] marine metagenome; seawater
116
42
-
Arg
TCT
[ENA]
¢þ
>WENV183623368
OOFY01001087
[OOFY] marine metagenome; sea ice
803
877
+
Arg
TCT
[ENA]
¢þ
>WENV183624790
OOGE01009795
[OOGE] marine metagenome; sea ice
624
550
-
Arg
TCT
[ENA]
¢þ
>WENV183628890
OOGO01053179
[OOGO] marine metagenome; sea ice
358
432
+
Arg
TCT
[ENA]
¢þ
>WENV183629239
OOGP01012210
[OOGP] marine metagenome; seawater
954
880
-
Arg
TCT
[ENA]
¢þ
>WENV183748335
PPFU01029088
[PPFU] hypolithon metagenome; Antarctic Hypolithon
187
113
-
Arg
TCT
[ENA]
¢þ
>WENV170569334
FLMP01172333
[FLMP] seawater metagenome; seawater
351
275
-
Arg
TCT
[ENA]
¢þ
>WENV170647127
JQIA01012066
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
2051
1977
-
Arg
TCT
[ENA]
¢þ
>WENV170783504
MAAC01017473
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
51610
51684
+
Arg
TCT
[ENA]
¢þ
>WENV170783823
MAAC01019050
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
15492
15418
-
Arg
TCT
[ENA]
¢þ
>WENV170783853
MAAC01019220
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
63043
63119
+
Arg
TCT
[ENA]
¢þ
>WENV170818406
MDSX01070587
[MDSX] marine metagenome; seawater
15659
15733
+
Arg
TCT
[ENA]
¢þ
>WENV170921587
MDTG01016884
[MDTG] marine metagenome; seawater
60916
60990
+
Arg
TCT
[ENA]
¢þ
>WENV170948115
MEHZ011087416
[MEHZ] marine metagenome; marine surface water
1
75
+
Arg
TCT
[ENA]
¢þ
>C181113291
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
2351689
2351763
+
Arg
TCT
-
¡û
>C181113326
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
2663758
2663832
+
Arg
TCT
-
¡û
>C181113383
CP025118
Bacteroidota
Lacinutrix sp. Bg11-31 [CP025118]
1149397
1149323
-
Arg
TCT
-
¡û
>C191166171
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
3990874
3990800
-
Arg
TCT
-
¡û
>W1910693667
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
376069
376143
+
Arg
TCT
[ENA]
¡û
>W1810173766
PJNI01000008
Bacteroidota
Brumimicrobium salinarum LHR20 [PJNI]
208830
208904
+
Arg
TCT
[ENA]
¡û
>W1810385501
PXOQ01000009
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
377031
376957
-
Arg
TCT
[ENA]
¡û
>W1810693838
QLLQ01000002
Bacteroidota
Gelidibacter algens DSM 12408 [QLLQ]
263312
263386
+
Arg
TCT
[ENA]
¡û
>W1511388568
JSWF01000019
Bacteroidota
Lacinutrix jangbogonensis PAMC 27137 [JSWF]
206950
206876
-
Arg
TCT
[ENA]
¡û
>W1511388608
JSWG01000007
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
13979
14055
+
Arg
TCT
[ENA]
¡û
>W11176832
AFXZ01000002
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
39318
39244
-
Arg
TCT
[ENA]
¡û
>W1610632926
LIQG01000018
Bacteroidota
Lacinutrix mariniflava [LIQG]
23595
23521
-
Arg
TCT
[ENA]
¡û
>W1610632991
LIQH01000039
Bacteroidota
Lacinutrix algicola [LIQH]
434374
434448
+
Arg
TCT
[ENA]
¡û
>W1611042584
LZRN01000006
Bacteroidota
Gelidibacter algens [LZRN]
147339
147265
-
Arg
TCT
[ENA]
¡û
>W1611042636
LZRO01000029
Bacteroidota
Bizionia sp. APA-3 [LZRO]
35299
35373
+
Arg
TCT
[ENA]
¡û
>WENV080379
ABCO01000005
Unidentified eubacterium SCB49
210524
210600
+
Arg
TCT
[ENA]
>W1710532557
FNQK01000021
Bacteroidota
Bizionia paragorgiae [FNQK]
55560
55636
+
Arg
TCT
[ENA]
¡û
>W1710767358
LIQG01000018
Bacteroidota
Lacinutrix mariniflava [LIQG]
23595
23521
-
Arg
TCT
[ENA]
¡û
>W1710767423
LIQH01000039
Bacteroidota
Lacinutrix algicola [LIQH]
434374
434448
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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