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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unidentified eubacterium SCB49
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467479 (20 seq.)
>WENV180383040
OBOU01000054
[OBOU] marine metagenome; ENV:00002010
10763
10690
-
Lys
TTT
[ENA]
¢þ
>WENV180383554
OBOV01000468
[OBOV] marine metagenome; ENV:00002010
3257
3184
-
Lys
TTT
[ENA]
¢þ
>WENV181322427
OFKR01007134
[OFKR] marine metagenome; sea ice
313
386
+
Lys
TTT
[ENA]
¢þ
>WENV182556639
OJDG01027251
[OJDG] seawater metagenome; Sea water
611
538
-
Lys
TTT
[ENA]
¢þ
>WENV182570041
OJFB01005473
[OJFB] seawater metagenome; Sea water
158
85
-
Lys
TTT
[ENA]
¢þ
>WENV182591759
OJIO01003983
[OJIO] seawater metagenome; Sea water
3724
3797
+
Lys
TTT
[ENA]
¢þ
>WENV183616182
OOEC01138469
[OOEC] marine metagenome; sea ice
305
378
+
Lys
TTT
[ENA]
¢þ
>WENV183617129
OOEE01066623
[OOEE] marine metagenome; sea ice
231
158
-
Lys
TTT
[ENA]
¢þ
>WENV183620329
OOFR01032306
[OOFR] marine metagenome; seawater
145
218
+
Lys
TTT
[ENA]
¢þ
>WENV183628396
OOGN01032663
[OOGN] marine metagenome; sea ice
242
169
-
Lys
TTT
[ENA]
¢þ
>WENV170327282
CESU01062606
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
512
587
+
Lys
TTT
[ENA]
¢þ
>WENV170535737
CEWP01098843
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
224
149
-
Lys
TTT
[ENA]
¢þ
>WENV170568665
FLMP01062290
[FLMP] seawater metagenome; seawater
84
159
+
Lys
TTT
[ENA]
¢þ
>WENV170623371
FUWD013148650
[FUWD] metagenome; unknown
597
672
+
Lys
TTT
[ENA]
¢þ
>WENV170631640
FUWD013359792
[FUWD] metagenome; unknown
597
672
+
Lys
TTT
[ENA]
¢þ
>WENV170819813
MDSX01099653
[MDSX] marine metagenome; seawater
2032
1957
-
Lys
TTT
[ENA]
¢þ
>WENV170919730
MDTF01011764
[MDTF] marine metagenome; seawater
30140
30215
+
Lys
TTT
[ENA]
¢þ
>WENV171002575
NHNJ01088392
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV055450
AACY023227858
Marine microbial communities from Global Ocean Sampling (GOS)
1005
928
-
Lys
TTT
[ENA]
>WENV080382
ABCO01000006
Unidentified eubacterium SCB49
197697
197620
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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