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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = GTA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684211 (2 seq.)
>VRL181000653
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
72719
72647
-
Tyr
GTA
[ENA]
¡û
>VRL181000722
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
74211
74139
-
Tyr
GTA
[ENA]
¡û
Identical group No.793234 (1 seq.)
>VRL181000720
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
74477
74406
-
Tyr
GTA
[ENA]
¡û
Identical group No.793235 (1 seq.)
>VRL181000721
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
74313
74242
-
Tyr
GTA
[ENA]
¡û
Identical group No.802034 (1 seq.)
>VRL181000651
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
72930
72859
-
Tyr
GTA
[ENA]
¡û
Identical group No.802035 (1 seq.)
>VRL181000652
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
72821
72750
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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