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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = GTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247526 (1 seq.)
>VRL181000702
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
148731
148656
-
Asp
GTC
[ENA]
¡û
Identical group No.252353 (1 seq.)
>VRL181000633
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
145792
145717
-
Asp
GTC
[ENA]
¡û
Identical group No.793226 (1 seq.)
>VRL181000705
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
146444
146373
-
Asp
GTC
[ENA]
¡û
Identical group No.802026 (1 seq.)
>VRL181000636
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
145516
145445
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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