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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = GTT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.450674 (1 seq.)
>VRL181000659
LC015647
Varidnaviria
Yellowstone lake phycodnavirus 1 (LC015647)
61048
61122
+
Asn
GTT
[ENA]
¡û
Identical group No.536295 (1 seq.)
>VRL183000168
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
125812
125739
-
Asn
GTT
[ENA]
¡û
Identical group No.684208 (1 seq.)
>VRL181000712
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
125550
125478
-
Asn
GTT
[ENA]
¡û
Identical group No.703713 (1 seq.)
>VRL181000646
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
125632
125561
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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