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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = TAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.108786 (1 seq.)
>VRL181000663
LC015649
Varidnaviria
Yellowstone lake phycodnavirus 3 (LC015649)
55560
55646
+
Leu
TAA
[ENA]
¡û
Identical group No.129195 (1 seq.)
>VRL181000632
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
157232
157149
-
Leu
TAA
[ENA]
¡û
Identical group No.160102 (1 seq.)
>VRL181000694
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
286333
286249
-
Leu
TAA
[ENA]
¡û
Identical group No.164172 (1 seq.)
>VRL181000625
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
279992
279908
-
Leu
TAA
[ENA]
¡û
Identical group No.179820 (1 seq.)
>VRL181000655
LC015647
Varidnaviria
Yellowstone lake phycodnavirus 1 (LC015647)
60048
60130
+
Leu
TAA
[ENA]
¡û
Identical group No.189787 (1 seq.)
>VRL181000497
AP017398
Varidnaviria
Tokyovirus A1 (AP017398)
5341
5424
+
Leu
TAA
[ENA]
¡û
Identical group No.229575 (1 seq.)
>VRL181000701
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
161600
161520
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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