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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = TAT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.445185 (1 seq.)
>VRL181000660
LC015648
Varidnaviria
Yellowstone lake phycodnavirus 2 (LC015648)
80234
80161
-
Ile
TAT
[ENA]
¡û
Identical group No.450673 (1 seq.)
>VRL181000656
LC015647
Varidnaviria
Yellowstone lake phycodnavirus 1 (LC015647)
60135
60209
+
Ile
TAT
[ENA]
¡û
Identical group No.601795 (2 seq.)
>VRL181000525
KU170628
Ascoviridae
Heliothis virescens ascovirus 3h (KU170628)
43426
43354
-
Ile
TAT
[ENA]
¡û
>VRL181000664
LC332918
Varidnaviria
Heliothis virescens ascovirus 3j (LC332918)
44822
44750
-
Ile
TAT
[ENA]
¡û
Identical group No.684200 (1 seq.)
>VRL181000689
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
294084
294012
-
Ile
TAT
[ENA]
¡û
Identical group No.703706 (1 seq.)
>VRL181000620
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
285446
285374
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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