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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Varidnaviria
Anticodon = TTG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684197 (1 seq.)
>VRL181000678
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
304283
304211
-
Gln
TTG
[ENA]
¡û
Identical group No.684212 (1 seq.)
>VRL182000029
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
831651
831579
-
Gln
TTG
[ENA]
¡û
Identical group No.703715 (1 seq.)
>VRL182000026
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
294786
294714
-
Gln
TTG
[ENA]
¡û
Identical group No.703716 (1 seq.)
>VRL182000027
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
816672
816599
-
Gln
TTG
[ENA]
¡û
Identical group No.793214 (1 seq.)
>VRL181000674
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
831544
831473
-
Gln
TTG
[ENA]
¡û
Identical group No.793215 (1 seq.)
>VRL181000679
MF405918
Varidnaviria
Tupanvirus deep ocean (MF405918)
304168
304096
-
Gln
TTG
[ENA]
¡û
Identical group No.802013 (1 seq.)
>VRL181000607
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
816599
816527
-
Gln
TTG
[ENA]
¡û
Identical group No.802014 (1 seq.)
>VRL181000610
KY523104
Varidnaviria
Tupanvirus soda lake (KY523104)
294681
294610
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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