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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
Anticodon = GCT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20751 (50 seq.)
>W131158437
AQUB01000022
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
2442
2535
+
Ser
GCT
[ENA]
¡û
>W131162567
AQYZ01000003
Actinomycetota
actinobacterium SCGC AAA024-D14 [AQYZ]
43604
43695
+
Ser
GCT
[ENA]
¡û
>W131162944
AQZI01000002
Actinomycetota
actinobacterium SCGC AAA044-N04 [AQZI]
41828
41737
-
Ser
GCT
[ENA]
¡û
>W131183095
ARRO01000001
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
10985
11074
+
Ser
GCT
[ENA]
¡û
>WENV180110533
OAPN01000382
[OAPN] marine metagenome; 2011
808
719
-
Ser
GCT
[ENA]
¢þ
>WENV180113926
OAPR01056945
[OAPR] marine metagenome; seawater
209
298
+
Ser
GCT
[ENA]
¢þ
>WENV180377440
OBON01024139
[OBON] marine metagenome; sea water
218
307
+
Ser
GCT
[ENA]
¢þ
>WENV181368407
OFQL01003356
[OFQL] freshwater metagenome; Freshwater Lake
278
189
-
Ser
GCT
[ENA]
¢þ
>WENV181368931
OFQN01004574
[OFQN] freshwater metagenome; Freshwater Lake
705
614
-
Ser
GCT
[ENA]
¢þ
>WENV181369492
OFQP01004447
[OFQP] freshwater metagenome; Freshwater Lake
421
332
-
Ser
GCT
[ENA]
¢þ
>WENV181369892
OFQR01001678
[OFQR] freshwater metagenome; Freshwater Lake
998
1087
+
Ser
GCT
[ENA]
¢þ
>WENV181370709
OFQT01005055
[OFQT] freshwater metagenome; Freshwater Lake
375
284
-
Ser
GCT
[ENA]
¢þ
>WENV181377203
OFRA01004029
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1308
1217
-
Ser
GCT
[ENA]
¢þ
>WENV181379454
OFRD01001785
[OFRD] wastewater metagenome; Exp Tend CN 100WW
252
343
+
Ser
GCT
[ENA]
¢þ
>WENV181381920
OFRF01027790
[OFRF] wastewater metagenome; Exp Tend CN 50WW
388
297
-
Ser
GCT
[ENA]
¢þ
>WENV181384738
OFRI01007989
[OFRI] wastewater metagenome; Exp Tend VB 90WW
189
98
-
Ser
GCT
[ENA]
¢þ
>WENV181386165
OFRL01000995
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
4821
4730
-
Ser
GCT
[ENA]
¢þ
>WENV181395832
OFSB01007995
[OFSB] freshwater metagenome; Freshwater Lake
92
181
+
Ser
GCT
[ENA]
¢þ
>WENV181400251
OFSF01003277
[OFSF] wastewater metagenome; Exp Tend VB 100WW
3596
3687
+
Ser
GCT
[ENA]
¢þ
>W141170753
AXYW01000035
Unclassified
delta proteobacterium JGI 0002000-E07 [AXYW]
13114
13023
-
Ser
GCT
[ENA]
¡û
>WENV181836031
OGVJ01000139
[OGVJ] freshwater metagenome; freshwater
3621
3710
+
Ser
GCT
[ENA]
¢þ
>WENV181854942
OGWK01040731
[OGWK] freshwater metagenome; freshwater
258
167
-
Ser
GCT
[ENA]
¢þ
>W141202943
AZHS01000030
Actinomycetota
actinobacterium SCGC AAA041-L13 [AZHS]
4370
4461
+
Ser
GCT
[ENA]
¡û
>WENV170570426
FLOH01000004
[FLOH] marine metagenome; water
835271
835362
+
Ser
GCT
[ENA]
¢þ
>WENV170600359
FUWD010121469
[FUWD] metagenome; unknown
617
526
-
Ser
GCT
[ENA]
¢þ
>WENV170600398
FUWD010123351
[FUWD] metagenome; unknown
59
148
+
Ser
GCT
[ENA]
¢þ
>WENV170602703
FUWD010255370
[FUWD] metagenome; unknown
181
92
-
Ser
GCT
[ENA]
¢þ
>WENV170604304
FUWD010384412
[FUWD] metagenome; unknown
539
630
+
Ser
GCT
[ENA]
¢þ
>WENV170609667
FUWD011465734
[FUWD] metagenome; unknown
72
161
+
Ser
GCT
[ENA]
¢þ
>WENV170622969
FUWD013130089
[FUWD] metagenome; unknown
693
604
-
Ser
GCT
[ENA]
¢þ
>WENV170625506
FUWD013199399
[FUWD] metagenome; unknown
5973
5882
-
Ser
GCT
[ENA]
¢þ
>WENV170631203
FUWD013343199
[FUWD] metagenome; unknown
693
604
-
Ser
GCT
[ENA]
¢þ
>WENV170633736
FUWD013401776
[FUWD] metagenome; unknown
5973
5882
-
Ser
GCT
[ENA]
¢þ
>WENV170645615
JNSL01000054
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17178
17087
-
Ser
GCT
[ENA]
¢þ
>WENV170645635
JNSL01000118
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
3011
3100
+
Ser
GCT
[ENA]
¢þ
>C181018648
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
277659
277750
+
Ser
GCT
-
¡û
>C181018749
CP015605
Actinomycetota
Actinobacteria bacterium IMCC19121 [CP015605]
277445
277354
-
Ser
GCT
-
¡û
>C181020858
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
1412329
1412240
-
Ser
GCT
-
¡û
>C181021007
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
1284866
1284777
-
Ser
GCT
-
¡û
>C181021093
CP016776
Actinomycetota
Candidatus Planktophila vernalis [CP016776]
23618
23709
+
Ser
GCT
-
¡û
>C181021267
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
1335976
1335887
-
Ser
GCT
-
¡û
>C181021380
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
1362779
1362690
-
Ser
GCT
-
¡û
>SRA1005419
SRR013519.13559
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
134
45
-
Ser
GCT
[SRA]
>WENV044922
AACY022465939
Marine microbial communities from Global Ocean Sampling (GOS)
450
357
-
Ser
GCT
[ENA]
>WENV057658
AACY023301690
Marine microbial communities from Global Ocean Sampling (GOS)
1072
1165
+
Ser
GCT
[ENA]
>WENV057782
AACY023306367
Marine microbial communities from Global Ocean Sampling (GOS)
144
237
+
Ser
GCT
[ENA]
>WENV057795
AACY023306886
Marine microbial communities from Global Ocean Sampling (GOS)
307
214
-
Ser
GCT
[ENA]
>WENV058802
AACY023342326
Marine microbial communities from Global Ocean Sampling (GOS)
1296
1389
+
Ser
GCT
[ENA]
>W1610625359
LIAM01000064
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4354
4443
+
Ser
GCT
[ENA]
¡û
>W1710756486
LIAM01000064
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
4354
4443
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK