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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
Anticodon = TAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467802 (31 seq.)
>WENV180111067
OAPN01025979
[OAPN] marine metagenome; 2011
213
140
-
Leu
TAA
[ENA]
¢þ
>WENV180357458
OBNN01012220
[OBNN] marine metagenome; Coastal water
532
607
+
Leu
TAA
[ENA]
¢þ
>WENV180377921
OBON01205623
[OBON] marine metagenome; sea water
302
227
-
Leu
TAA
[ENA]
¢þ
>WENV180394163
OBPR01084011
[OBPR] marine metagenome; ENVO:00002042
145
70
-
Leu
TAA
[ENA]
¢þ
>WENV181368385
OFQL01001752
[OFQL] freshwater metagenome; Freshwater Lake
1405
1330
-
Leu
TAA
[ENA]
¢þ
>WENV181369923
OFQR01002476
[OFQR] freshwater metagenome; Freshwater Lake
1182
1107
-
Leu
TAA
[ENA]
¢þ
>WENV181370225
OFQS01000878
[OFQS] freshwater metagenome; Freshwater Lake
3436
3511
+
Leu
TAA
[ENA]
¢þ
>WENV181370751
OFQT01008020
[OFQT] freshwater metagenome; Freshwater Lake
263
188
-
Leu
TAA
[ENA]
¢þ
>WENV181377796
OFRA01032992
[OFRA] wastewater metagenome; Lake Maggiore Verbania
627
702
+
Leu
TAA
[ENA]
¢þ
>WENV181395783
OFSB01003223
[OFSB] freshwater metagenome; Freshwater Lake
778
853
+
Leu
TAA
[ENA]
¢þ
>WENV181836269
OGVJ01003103
[OGVJ] freshwater metagenome; freshwater
1229
1156
-
Leu
TAA
[ENA]
¢þ
>WENV181838669
OGVN01008943
[OGVN] freshwater metagenome; freshwater
726
799
+
Leu
TAA
[ENA]
¢þ
>WENV181842644
OGVT01008364
[OGVT] freshwater metagenome; freshwater
905
830
-
Leu
TAA
[ENA]
¢þ
>WENV181843166
OGVU01001819
[OGVU] freshwater metagenome; freshwater
880
953
+
Leu
TAA
[ENA]
¢þ
>WENV181850867
OGWE01001445
[OGWE] freshwater metagenome; freshwater
1093
1166
+
Leu
TAA
[ENA]
¢þ
>WENV181853311
OGWI01001961
[OGWI] freshwater metagenome; freshwater
1243
1168
-
Leu
TAA
[ENA]
¢þ
>WENV181853396
OGWI01003798
[OGWI] freshwater metagenome; freshwater
1332
1405
+
Leu
TAA
[ENA]
¢þ
>WENV181855710
OGWM01000741
[OGWM] freshwater metagenome; freshwater
2699
2772
+
Leu
TAA
[ENA]
¢þ
>WENV170570440
FLOH01000004
[FLOH] marine metagenome; water
562500
562425
-
Leu
TAA
[ENA]
¢þ
>WENV170599049
FUWD010060188
[FUWD] metagenome; unknown
205
280
+
Leu
TAA
[ENA]
¢þ
>WENV170617265
FUWD012919318
[FUWD] metagenome; unknown
25
100
+
Leu
TAA
[ENA]
¢þ
>WENV170645574
JNSK01000194
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
9283
9358
+
Leu
TAA
[ENA]
¢þ
>WENV002073
AACY020058193
Marine microbial communities from Global Ocean Sampling (GOS)
939
1014
+
Leu
TAA
[ENA]
>SRA1005418
SRR013519.9269
Viral metagenome of the Antarctic Lake Limnopolar in spring and summer? (SRP000593)
145
72
-
Leu
TAA
[SRA]
>WENV057445
AACY023295065
Marine microbial communities from Global Ocean Sampling (GOS)
641
716
+
Leu
TAA
[ENA]
>WENV057563
AACY023299040
Marine microbial communities from Global Ocean Sampling (GOS)
1176
1101
-
Leu
TAA
[ENA]
>WENV061860
AACY023442477
Marine microbial communities from Global Ocean Sampling (GOS)
1558
1483
-
Leu
TAA
[ENA]
>W1610625360
LIAM01000090
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
76
1
-
Leu
TAA
[ENA]
¡û
>W1610625383
LIAN01000370
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
449
374
-
Leu
TAA
[ENA]
¡û
>W1710756487
LIAM01000090
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120619-bin91 [LIAM]
76
1
-
Leu
TAA
[ENA]
¡û
>W1710756510
LIAN01000370
Actinomycetota
Actinobacteria bacterium BACL15 MAG-120823-bin78 [LIAN]
449
374
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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