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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Viridiplantae
Anticodon = GAG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72562 (1 seq.)
>CHL1810045817
KY819064
Viridiplantae
Chlorodesmis fastigiata (KY819064)
17182
17272
+
Leu
GAG
[ENA]
¡û
Identical group No.79317 (1 seq.)
>CHL1810036099
KX808498
Viridiplantae
Caulerpa cliftonii (KX808498)
1
86
+
Leu
GAG
[ENA]
¡û
Identical group No.101747 (1 seq.)
>CHL1810011402
KJ397925
Viridiplantae
Chlorella sorokiniana crs4 (KJ397925)
106717
106633
-
Leu
GAG
[ENA]
¡û
Identical group No.105597 (1 seq.)
>CHL1810023583
KT946602
Viridiplantae
Caulerpa racemosa (KT946602)
122075
122159
+
Leu
GAG
[ENA]
¡û
Identical group No.111665 (1 seq.)
>CHL090100003
AB001684
Viridiplantae
Chlorella vulgaris
21745
21829
+
Leu
GAG
[ENA]
¡û
Identical group No.129200 (1 seq.)
>CHL1810008820
KC631634
Viridiplantae
Auxenochlorella protothecoides (KC631634)
10513
10428
-
Leu
GAG
[ENA]
¡û
Identical group No.134545 (2 seq.)
>CHL1810015230
KM462886
Viridiplantae
Pseudochloris wilhelmii (KM462886)
72583
72666
+
Leu
GAG
[ENA]
¡û
>CHL1810015237
KM462886
Viridiplantae
Pseudochloris wilhelmii (KM462886)
103404
103321
-
Leu
GAG
[ENA]
¡û
Identical group No.144738 (1 seq.)
>CHL1810000798
AP018373
Viridiplantae
Prototheca cutis JCM 15793 (AP018373)
41833
41750
-
Leu
GAG
[ENA]
¡û
Identical group No.144747 (1 seq.)
>CHL1810014996
KM462878
Viridiplantae
Choricystis parasitica (KM462878)
62743
62660
-
Leu
GAG
[ENA]
¡û
Identical group No.146442 (1 seq.)
>CHL1810015217
KM462885
Viridiplantae
Dicloster acuatus (KM462885)
741
657
-
Leu
GAG
[ENA]
¡û
Identical group No.148005 (1 seq.)
>CHL1810015295
KM462888
Viridiplantae
Marvania geminata (KM462888)
108387
108470
+
Leu
GAG
[ENA]
¡û
Identical group No.150755 (2 seq.)
>CHL1810001947
FJ968741
Viridiplantae
Parachlorella kessleri (FJ968741)
88758
88842
+
Leu
GAG
[ENA]
¡û
>CHL1810001956
FJ968741
Viridiplantae
Parachlorella kessleri (FJ968741)
123534
123450
-
Leu
GAG
[ENA]
¡û
Identical group No.150759 (1 seq.)
>CHL1810045902
KY819068
Viridiplantae
Caulerpa manorensis (KY819068)
75400
75483
+
Leu
GAG
[ENA]
¡û
Identical group No.152226 (1 seq.)
>CHL1810011666
KJ461680
Viridiplantae
Klebsormidium flaccidum (KJ461680)
31039
30956
-
Leu
GAG
[ENA]
¡û
Identical group No.153537 (1 seq.)
>CHL1810001725
FJ493498
Viridiplantae
Pycnococcus provasolii CCMP 1203 (FJ493498)
78818
78735
-
Leu
GAG
[ENA]
¡û
Identical group No.168954 (1 seq.)
>CHL1810005974
JX402620
Viridiplantae
Trebouxiophyceae sp. MX-AZ01 (JX402620)
92693
92775
+
Leu
GAG
[ENA]
¡û
Identical group No.172244 (1 seq.)
>CHL090100360
AF166114
Viridiplantae
Mesostigma viride
59787
59705
-
Leu
GAG
[ENA]
¡û
Identical group No.176567 (1 seq.)
>CHL090100297
AF137379
Viridiplantae
Nephroselmis olivacea
54
138
+
Leu
GAG
[ENA]
¡û
Identical group No.196754 (1 seq.)
>CHL090102245
DQ422812
Viridiplantae
Chlorokybus atmophyticus
86246
86328
+
Leu
GAG
[ENA]
¡û
Identical group No.199423 (1 seq.)
>CHL090101874
DQ229107
Viridiplantae
Chara vulgaris
7395
7476
+
Leu
GAG
[ENA]
¡û
Identical group No.200811 (1 seq.)
>CHL1810012775
KJ746599
Viridiplantae
Picocystis salinarum (KJ746599)
522
603
+
Leu
GAG
[ENA]
¡û
Identical group No.223595 (1 seq.)
>CHL1810015013
KM462879
Viridiplantae
Paradoxia multiseta (KM462879)
97763
97843
+
Leu
GAG
[ENA]
¡û
Identical group No.224670 (1 seq.)
>CHL1810014840
KM462872
Viridiplantae
Xylochloris irregularis (KM462872)
123253
123333
+
Leu
GAG
[ENA]
¡û
Identical group No.224675 (1 seq.)
>CHL1810045846
KY819065
Viridiplantae
Rhipilia penicilloides (KY819065)
26845
26926
+
Leu
GAG
[ENA]
¡û
Identical group No.225268 (1 seq.)
>CHL1810012840
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
4782
4702
-
Leu
GAG
[ENA]
¡û
Identical group No.228524 (1 seq.)
>CHL1810015159
KM462884
Viridiplantae
Botryococcus braunii (KM462884)
36541
36621
+
Leu
GAG
[ENA]
¡û
Identical group No.268265 (1 seq.)
>CHL1810048439
LN810505
Viridiplantae
Tydemania expeditionis FL1151 (LN810505)
11986
11912
-
Leu
GAG
[ENA]
¡û
Identical group No.837161 (1 seq.)
>CHL090900029
AE009947
Viridiplantae
Saccharum hybrid cultivar SP-80-3280
47012
45990
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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