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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wallaby gut metagenome MeugComb_C1
Anticodon = CAA
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120759 (33 seq.)
>W1711579355
MNRQ01000007
Bacillota
Clostridium sp. 27_14 [MNRQ]
21248
21162
-
Leu
CAA
[ENA]
¡û
>WENV180752614
ODHT01000818
[ODHT] human metagenome; G_DNA_Stool
21913
21827
-
Leu
CAA
[ENA]
¢þ
>WENV180811877
ODJN01001213
[ODJN] human metagenome; G_DNA_Stool
8572
8658
+
Leu
CAA
[ENA]
¢þ
>WENV180894582
ODMR01136760
[ODMR] human metagenome; G_DNA_Stool
259
173
-
Leu
CAA
[ENA]
¢þ
>WENV180941524
ODTZ01006293
[ODTZ] human metagenome; G_DNA_Stool
5456
5542
+
Leu
CAA
[ENA]
¢þ
>WENV181128045
OEFW01029283
[OEFW] human metagenome; G_DNA_Stool
1146
1060
-
Leu
CAA
[ENA]
¢þ
>WENV181543689
OGIE01047427
[OGIE] metagenome; Human gut stool
103
17
-
Leu
CAA
[ENA]
¢þ
>WENV181830908
OGUO01017123
[OGUO] human gut metagenome; faeces
1252
1166
-
Leu
CAA
[ENA]
¢þ
>WENV181866490
OGWV01006626
[OGWV] human gut metagenome; faeces
3270
3356
+
Leu
CAA
[ENA]
¢þ
>WENV182244236
OHSI01046245
[OHSI] human gut metagenome; feces
487
401
-
Leu
CAA
[ENA]
¢þ
>WENV182293560
OHWC01004156
[OHWC] human gut metagenome; feces
2506
2420
-
Leu
CAA
[ENA]
¢þ
>WENV182295176
OHWE01026854
[OHWE] human gut metagenome; feces
291
377
+
Leu
CAA
[ENA]
¢þ
>WENV182303273
OHWU01007105
[OHWU] human gut metagenome; feces
945
1031
+
Leu
CAA
[ENA]
¢þ
>WENV182309617
OHXK01004984
[OHXK] human gut metagenome; feces
1811
1897
+
Leu
CAA
[ENA]
¢þ
>WENV182321322
OHYL01006565
[OHYL] human gut metagenome; feces
938
852
-
Leu
CAA
[ENA]
¢þ
>WENV182341725
OIAG01002497
[OIAG] human gut metagenome; feces
4799
4885
+
Leu
CAA
[ENA]
¢þ
>WENV182349159
OIBA01013946
[OIBA] human gut metagenome; feces
404
490
+
Leu
CAA
[ENA]
¢þ
>WENV182372251
OICV01012770
[OICV] human gut metagenome; feces
1021
1107
+
Leu
CAA
[ENA]
¢þ
>WENV182374124
OIDA01010648
[OIDA] human gut metagenome; feces
1086
1172
+
Leu
CAA
[ENA]
¢þ
>WENV182397268
OIEM01018432
[OIEM] human gut metagenome; human gut
293
379
+
Leu
CAA
[ENA]
¢þ
>WENV182524600
OIWT01000382
[OIWT] human gut metagenome; faeces
58837
58923
+
Leu
CAA
[ENA]
¢þ
>WENV182621365
OJKI01094219
[OJKI] metagenome; faeces
336
422
+
Leu
CAA
[ENA]
¢þ
>WENV182634685
OJKY01017635
[OJKY] metagenome; faeces
100
186
+
Leu
CAA
[ENA]
¢þ
>WENV182666235
OJNH01012954
[OJNH] human gut metagenome; feces
472
386
-
Leu
CAA
[ENA]
¢þ
>WENV182878308
OKRZ01000195
[OKRZ] human gut metagenome; faeces
20968
21054
+
Leu
CAA
[ENA]
¢þ
>WENV183110088
OLNN01071479
[OLNN] human gut metagenome; faeces
262
176
-
Leu
CAA
[ENA]
¢þ
>WENV183165930
OLOX01022425
[OLOX] human gut metagenome; faeces
374
288
-
Leu
CAA
[ENA]
¢þ
>WENV183223492
OLQM01026175
[OLQM] human gut metagenome; faeces
1302
1388
+
Leu
CAA
[ENA]
¢þ
>WENV183275096
OLRY01008314
[OLRY] human gut metagenome; faeces
2113
2199
+
Leu
CAA
[ENA]
¢þ
>WENV183321268
OLVW01013502
[OLVW] human gut metagenome; faeces
2548
2634
+
Leu
CAA
[ENA]
¢þ
>WENV183329032
OLWA01099506
[OLWA] human gut metagenome; faeces
384
470
+
Leu
CAA
[ENA]
¢þ
>WENV183480954
OMFJ01013013
[OMFJ] human gut metagenome; feces
1590
1504
-
Leu
CAA
[ENA]
¢þ
>ENV09002777
ADGC01023765
Wallaby gut metagenome MeugComb_C1
123
37
-
Leu
CAA
[ENA]
¡û
Identical group No.145369 (2 seq.)
>ENV09002483
ADGC01003158
Wallaby gut metagenome MeugComb_C1
2460
2546
+
Leu
CAA
[ENA]
¡û
>W11155813
AFAK01000343
Gammaproteobacteria
Succinivibrionaceae bacterium WG-1 [AFAK]
9274
9360
+
Leu
CAA
[ENA]
¡û
Identical group No.145370 (1 seq.)
>ENV09002516
ADGC01004450
Wallaby gut metagenome MeugComb_C1
485
568
+
Leu
CAA
[ENA]
¡û
Identical group No.145374 (1 seq.)
>ENV09002800
ADGC01028766
Wallaby gut metagenome MeugComb_C1
605
519
-
Leu
CAA
[ENA]
¡û
Identical group No.145376 (1 seq.)
>ENV09002916
ADGC01045619
Wallaby gut metagenome MeugComb_C1
450
364
-
Leu
CAA
[ENA]
¡û
Identical group No.174536 (1 seq.)
>ENV09002513
ADGC01004022
Wallaby gut metagenome MeugComb_C1
569
654
+
Leu
CAA
[ENA]
¡û
Identical group No.174539 (1 seq.)
>ENV09002864
ADGC01036773
Wallaby gut metagenome MeugComb_C1
515
600
+
Leu
CAA
[ENA]
¡û
Identical group No.210465 (1 seq.)
>ENV09002846
ADGC01034157
Wallaby gut metagenome MeugComb_C1
110
28
-
Leu
CAA
[ENA]
¡û
Identical group No.231752 (1 seq.)
>ENV09002647
ADGC01010848
Wallaby gut metagenome MeugComb_C1
817
735
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK