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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wallaby gut metagenome MeugComb_C1
Anticodon = CAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.245496 (20 seq.)
>WENV180118700
OASD01000394
[OASD] human gut metagenome; ENVO:feces
16331
16407
+
Val
CAC
[ENA]
¢þ
>WENV180119668
OASE01001448
[OASE] human gut metagenome; ENVO:feces
2795
2719
-
Val
CAC
[ENA]
¢þ
>WENV180188288
OAWW01025124
[OAWW] human gut metagenome; faeces
443
368
-
Val
CAC
[ENA]
¢þ
>WENV180401869
OBRN01005558
[OBRN] human gut metagenome; ENVO:feces
246
170
-
Val
CAC
[ENA]
¢þ
>WENV180596365
OCPH01021530
[OCPH] human gut metagenome; ENVO:feces
235
160
-
Val
CAC
[ENA]
¢þ
>WENV180597085
OCPK01001554
[OCPK] human gut metagenome; ENVO:feces
1714
1790
+
Val
CAC
[ENA]
¢þ
>WENV182079890
OHGG01033220
[OHGG] human gut metagenome; feces
670
748
+
Val
CAC
[ENA]
¢þ
>WENV182876673
OKRY01000773
[OKRY] human gut metagenome; faeces
21542
21619
+
Val
CAC
[ENA]
¢þ
>WENV183391723
OLZD01016737
[OLZD] human gut metagenome; feces
216
140
-
Val
CAC
[ENA]
¢þ
>WENV183415437
OMAQ01014669
[OMAQ] human gut metagenome; feces
216
140
-
Val
CAC
[ENA]
¢þ
>WENV183477794
OMFC01017899
[OMFC] human gut metagenome; feces
216
140
-
Val
CAC
[ENA]
¢þ
>WENV183480325
OMFI01034468
[OMFI] human gut metagenome; feces
216
140
-
Val
CAC
[ENA]
¢þ
>WENV170658421
JTFP01109671
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
445
370
-
Val
CAC
[ENA]
¢þ
>WENV170669530
LAHS01000417
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
48634
48556
-
Val
CAC
[ENA]
¢þ
>W1910550695
FZRE01000013
Bacteroidota
Prevotellaceae bacterium KH2P17 [FZRE]
112842
112764
-
Val
CAC
[ENA]
¡û
>W1810577064
QENY01000017
Bacteroidota
Hallella colorans DSM 100333 [QENY]
1902
1977
+
Val
CAC
[ENA]
¡û
>ENV09002839
ADGC01033197
Wallaby gut metagenome MeugComb_C1
286
209
-
Val
CAC
[ENA]
¡û
>W1511351272
JRNC01000034
Bacteroidota
Prevotella sp. S7-1-8 [JRNC]
64970
65045
+
Val
CAC
[ENA]
¡û
>W11164337
AFJE01000022
Bacteroidota
Hallella multisaccharivorax DSM 17128 [AFJE]
28553
28475
-
Val
CAC
[ENA]
¡û
>W1710553853
FOHY01000012
Bacteroidota
Prevotella sp. kh1p2 [FOHY]
103258
103180
-
Val
CAC
[ENA]
¡û
Identical group No.264319 (1 seq.)
>ENV09002740
ADGC01019498
Wallaby gut metagenome MeugComb_C1
448
371
-
Val
CAC
[ENA]
¡û
Identical group No.293516 (44 seq.)
>WENV180562621
OCLB01031997
[OCLB] human gut metagenome; human gut
400
324
-
Val
CAC
[ENA]
¢þ
>WENV180564344
OCLD01095785
[OCLD] human gut metagenome; human gut
125
201
+
Val
CAC
[ENA]
¢þ
>WENV180653273
OCVV010173562
[OCVV] gut metagenome; gut
85
9
-
Val
CAC
[ENA]
¢þ
>WENV180653274
OCVV010173562
[OCVV] gut metagenome; gut
85
9
-
Val
CAC
[ENA]
¢þ
>WENV180655067
OCVV010394070
[OCVV] gut metagenome; gut
453
529
+
Val
CAC
[ENA]
¢þ
>WENV180655070
OCVV010394070
[OCVV] gut metagenome; gut
453
529
+
Val
CAC
[ENA]
¢þ
>WENV180655853
OCVV010487932
[OCVV] gut metagenome; gut
359
435
+
Val
CAC
[ENA]
¢þ
>WENV180655856
OCVV010487932
[OCVV] gut metagenome; gut
359
435
+
Val
CAC
[ENA]
¢þ
>WENV180665790
OCVV011194967
[OCVV] gut metagenome; gut
125
49
-
Val
CAC
[ENA]
¢þ
>WENV180665792
OCVV011194967
[OCVV] gut metagenome; gut
125
49
-
Val
CAC
[ENA]
¢þ
>WENV180669773
OCVV011287515
[OCVV] gut metagenome; gut
489
413
-
Val
CAC
[ENA]
¢þ
>WENV180669776
OCVV011287515
[OCVV] gut metagenome; gut
489
413
-
Val
CAC
[ENA]
¢þ
>WENV180671090
OCVV011311368
[OCVV] gut metagenome; gut
259
183
-
Val
CAC
[ENA]
¢þ
>WENV180671093
OCVV011311368
[OCVV] gut metagenome; gut
259
183
-
Val
CAC
[ENA]
¢þ
>WENV180671935
OCVV011323094
[OCVV] gut metagenome; gut
6
82
+
Val
CAC
[ENA]
¢þ
>WENV180671936
OCVV011323094
[OCVV] gut metagenome; gut
6
82
+
Val
CAC
[ENA]
¢þ
>WENV180677797
OCVV011791626
[OCVV] gut metagenome; gut
126
50
-
Val
CAC
[ENA]
¢þ
>WENV180677798
OCVV011791626
[OCVV] gut metagenome; gut
126
50
-
Val
CAC
[ENA]
¢þ
>WENV180679071
OCVV012161712
[OCVV] gut metagenome; gut
85
9
-
Val
CAC
[ENA]
¢þ
>WENV180679072
OCVV012161712
[OCVV] gut metagenome; gut
85
9
-
Val
CAC
[ENA]
¢þ
>WENV180754286
ODHT01186565
[ODHT] human metagenome; G_DNA_Stool
187
263
+
Val
CAC
[ENA]
¢þ
>WENV180871667
ODLN01175824
[ODLN] human metagenome; G_DNA_Stool
45
121
+
Val
CAC
[ENA]
¢þ
>WENV180893760
ODMR01013582
[ODMR] human metagenome; G_DNA_Stool
1148
1224
+
Val
CAC
[ENA]
¢þ
>WENV180962620
ODUN01018183
[ODUN] human metagenome; G_DNA_Stool
650
574
-
Val
CAC
[ENA]
¢þ
>WENV181024415
ODWX01073840
[ODWX] human metagenome; G_DNA_Stool
359
283
-
Val
CAC
[ENA]
¢þ
>WENV181357788
OFMU01091774
[OFMU] human gut metagenome; human gut
248
172
-
Val
CAC
[ENA]
¢þ
>WENV181691778
OGOZ01021647
[OGOZ] human gut metagenome; faeces
1518
1442
-
Val
CAC
[ENA]
¢þ
>WENV182514867
OIWM01038979
[OIWM] human gut metagenome; faeces
268
192
-
Val
CAC
[ENA]
¢þ
>WENV182523745
OIWS01038028
[OIWS] human gut metagenome; faeces
824
748
-
Val
CAC
[ENA]
¢þ
>WENV182532630
OIXA01003149
[OIXA] human gut metagenome; faeces
4026
4102
+
Val
CAC
[ENA]
¢þ
>WENV182659145
OJML01004772
[OJML] human gut metagenome; feces
1104
1180
+
Val
CAC
[ENA]
¢þ
>WENV183037800
OLGA01082091
[OLGA] human gut metagenome; faeces
290
214
-
Val
CAC
[ENA]
¢þ
>WENV183162224
OLOV01088956
[OLOV] human gut metagenome; faeces
197
273
+
Val
CAC
[ENA]
¢þ
>WENV183198796
OLPV01005035
[OLPV] human gut metagenome; faeces
6545
6621
+
Val
CAC
[ENA]
¢þ
>WENV183239980
OLRA01002604
[OLRA] human gut metagenome; faeces
16159
16083
-
Val
CAC
[ENA]
¢þ
>WENV183355171
OLXC01081988
[OLXC] human gut metagenome; feces
34
110
+
Val
CAC
[ENA]
¢þ
>WENV183517722
OMNP01009448
[OMNP] human gut metagenome; feces
1092
1016
-
Val
CAC
[ENA]
¢þ
>WENV183641621
OQVL01057390
[OQVL] human gut metagenome; human gut
63
139
+
Val
CAC
[ENA]
¢þ
>WENV183650836
OQVT01043982
[OQVT] human gut metagenome; human gut
133
57
-
Val
CAC
[ENA]
¢þ
>WENV183654328
OQWA01024932
[OQWA] human gut metagenome; human gut
857
781
-
Val
CAC
[ENA]
¢þ
>WENV183659698
OQWM01045506
[OQWM] human gut metagenome; human gut
1236
1312
+
Val
CAC
[ENA]
¢þ
>WENV170105164
CEAZ01064316
[CEAZ] gut metagenome; human stools
198
274
+
Val
CAC
[ENA]
¢þ
>WENV170776114
LXOW01129184
[LXOW] bovine gut metagenome; Cow rumen
293
217
-
Val
CAC
[ENA]
¢þ
>ENV09002810
ADGC01029551
Wallaby gut metagenome MeugComb_C1
202
126
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK