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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wallaby gut metagenome MeugComb_C1
Anticodon = CAG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145366 (1 seq.)
>ENV09002438
ADGC01001989
Wallaby gut metagenome MeugComb_C1
1361
1275
-
Leu
CAG
[ENA]
¡û
Identical group No.145373 (1 seq.)
>ENV09002727
ADGC01018424
Wallaby gut metagenome MeugComb_C1
656
739
+
Leu
CAG
[ENA]
¡û
Identical group No.161317 (3 seq.)
>WENV180664253
OCVV011151289
[OCVV] gut metagenome; gut
95
12
-
Leu
CAG
[ENA]
¢þ
>WENV180664254
OCVV011151289
[OCVV] gut metagenome; gut
95
12
-
Leu
CAG
[ENA]
¢þ
>ENV09002525
ADGC01004702
Wallaby gut metagenome MeugComb_C1
809
724
-
Leu
CAG
[ENA]
¡û
Identical group No.174540 (1 seq.)
>ENV09002881
ADGC01039937
Wallaby gut metagenome MeugComb_C1
613
528
-
Leu
CAG
[ENA]
¡û
Identical group No.182249 (33 seq.)
>WENV180000849
FLNV01002478
[FLNV] bioreactor metagenome; Moose rumen
2064
2146
+
Leu
CAG
[ENA]
¢þ
>WENV180001582
FLNX01002707
[FLNX] bioreactor metagenome; Moose rumen
2148
2230
+
Leu
CAG
[ENA]
¢þ
>WENV180339064
OBLI01002023
[OBLI] pig gut metagenome; faeces
124
206
+
Leu
CAG
[ENA]
¢þ
>WENV180567484
OCLL01058173
[OCLL] human gut metagenome; human gut
78
160
+
Leu
CAG
[ENA]
¢þ
>WENV180612121
OCPX01000530
[OCPX] human gut metagenome; human gut
37102
37184
+
Leu
CAG
[ENA]
¢þ
>WENV180684585
OCVV012859972
[OCVV] gut metagenome; gut
189
107
-
Leu
CAG
[ENA]
¢þ
>WENV180684587
OCVV012859972
[OCVV] gut metagenome; gut
189
107
-
Leu
CAG
[ENA]
¢þ
>WENV182343718
OIAK01040958
[OIAK] human gut metagenome; feces
166
84
-
Leu
CAG
[ENA]
¢þ
>WENV182932852
OKUV01000079
[OKUV] human gut metagenome; feces
445
527
+
Leu
CAG
[ENA]
¢þ
>WENV183551928
OOBJ01000273
[OOBJ] human gut metagenome; human gut
32375
32293
-
Leu
CAG
[ENA]
¢þ
>WENV183769458
PPYE01415587
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
294
212
-
Leu
CAG
[ENA]
¢þ
>WENV170778232
LXOW01373946
[LXOW] bovine gut metagenome; Cow rumen
2412
2494
+
Leu
CAG
[ENA]
¢þ
>W141557089
JHUW01000005
Bacteroidota
Prevotella sp. MA2016 [JHUW]
151140
151058
-
Leu
CAG
[ENA]
¡û
>W141557498
JHVE01000031
Bacteroidota
Prevotella sp. P6B4 [JHVE]
8316
8234
-
Leu
CAG
[ENA]
¡û
>W141559900
JHXD01000014
Bacteroidota
Xylanibacter ruminicola Ga6B6 [JHXD]
79773
79691
-
Leu
CAG
[ENA]
¡û
>W141560048
JHXG01000007
Bacteroidota
Xylanibacter brevis P6B11 [JHXG]
12553
12471
-
Leu
CAG
[ENA]
¡û
>W141560312
JHXM01000006
Bacteroidota
Xylanibacter brevis ATCC 19188 [JHXM]
25417
25499
+
Leu
CAG
[ENA]
¡û
>W141732617
JNKF01000011
Bacteroidota
Prevotella sp. P6B1 [JNKF]
314829
314911
+
Leu
CAG
[ENA]
¡û
>W141732675
JNKG01000010
Bacteroidota
Prevotella sp. RM4 [JNKG]
92752
92670
-
Leu
CAG
[ENA]
¡û
>W1911154643
NPJJ01000043
Bacteroidota
Prevotella sp. P5-108 [NPJJ]
173034
173116
+
Leu
CAG
[ENA]
¡û
>W1911154686
NPJK01000013
Bacteroidota
Prevotella sp. P5-64 [NPJK]
24385
24303
-
Leu
CAG
[ENA]
¡û
>W1911154750
NPJL01000057
Bacteroidota
Prevotella sp. P4-67 [NPJL]
217347
217265
-
Leu
CAG
[ENA]
¡û
>W1911154783
NPJM01000031
Bacteroidota
Prevotella sp. P4-51 [NPJM]
118857
118939
+
Leu
CAG
[ENA]
¡û
>ENV09002803
ADGC01029085
Wallaby gut metagenome MeugComb_C1
224
308
+
Leu
CAG
[ENA]
¡û
>C10110425
CP002006
Bacteroidota
Xylanibacter ruminicola 23 Bryant 23 [CP002006]
1037842
1037760
-
Leu
CAG
[Ensembl]
¡û
>W1710516544
FNCQ01000004
Bacteroidota
Prevotella communis BP1-148 [FNCQ]
116648
116730
+
Leu
CAG
[ENA]
¡û
>W1710524620
FNIW01000007
Bacteroidota
Prevotella communis BP1-145 [FNIW]
110827
110909
+
Leu
CAG
[ENA]
¡û
>W1710526024
FNJZ01000001
Bacteroidota
Prevotella sp. khp1 [FNJZ]
296915
296997
+
Leu
CAG
[ENA]
¡û
>W1710533552
FNRF01000002
Bacteroidota
Xylanibacter ruminicola [FNRF]
485503
485421
-
Leu
CAG
[ENA]
¡û
>W1710540756
FNXC01000002
Bacteroidota
Xylanibacter ruminicola [FNXC]
1541044
1540962
-
Leu
CAG
[ENA]
¡û
>W1710557680
FOLF01000002
Bacteroidota
Xylanibacter ruminicola [FOLF]
125674
125592
-
Leu
CAG
[ENA]
¡û
>W1710590627
FRBD01000011
Bacteroidota
Xylanibacter ruminicola [FRBD]
39870
39788
-
Leu
CAG
[ENA]
¡û
>W1710592321
FRCJ01000001
Bacteroidota
Xylanibacter ruminicola [FRCJ]
126407
126325
-
Leu
CAG
[ENA]
¡û
Identical group No.187776 (5 seq.)
>WENV180001335
FLNX01001594
[FLNX] bioreactor metagenome; Moose rumen
2342
2258
-
Leu
CAG
[ENA]
¢þ
>WENV180001337
FLNX01001594
[FLNX] bioreactor metagenome; Moose rumen
2091
2009
-
Leu
CAG
[ENA]
¢þ
>WENV180003460
FLNZ01004481
[FLNZ] bioreactor metagenome; Moose rumen
4813
4731
-
Leu
CAG
[ENA]
¢þ
>WENV182242115
OHSG01013566
[OHSG] human gut metagenome; feces
119
37
-
Leu
CAG
[ENA]
¢þ
>ENV09002837
ADGC01032795
Wallaby gut metagenome MeugComb_C1
239
157
-
Leu
CAG
[ENA]
¡û
Identical group No.210456 (2 seq.)
>ENV09002480
ADGC01003085
Wallaby gut metagenome MeugComb_C1
13161
13077
-
Leu
CAG
[ENA]
¡û
>W11155777
AFAK01000003
Gammaproteobacteria
Succinivibrionaceae bacterium WG-1 [AFAK]
26487
26403
-
Leu
CAG
[ENA]
¡û
Identical group No.210457 (1 seq.)
>ENV09002512
ADGC01003988
Wallaby gut metagenome MeugComb_C1
157
73
-
Leu
CAG
[ENA]
¡û
Identical group No.210461 (1 seq.)
>ENV09002748
ADGC01020541
Wallaby gut metagenome MeugComb_C1
570
487
-
Leu
CAG
[ENA]
¡û
Identical group No.226417 (1 seq.)
>ENV09002511
ADGC01003988
Wallaby gut metagenome MeugComb_C1
425
344
-
Leu
CAG
[ENA]
¡û
Identical group No.226418 (1 seq.)
>ENV09002565
ADGC01006332
Wallaby gut metagenome MeugComb_C1
297
378
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK