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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wallaby gut metagenome MeugComb_C1
Anticodon = CCT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.84131 (1 seq.)
>ENV09002392
ADGC01000857
Wallaby gut metagenome MeugComb_C1
97
9
-
Pseudo
CCT
[ENA]
¡û
Identical group No.234873 (1 seq.)
>ENV09002921
ADGC01048170
Wallaby gut metagenome MeugComb_C1
272
351
+
Arg
CCT
[ENA]
¡û
Identical group No.417043 (1 seq.)
>ENV09002631
ADGC01010188
Wallaby gut metagenome MeugComb_C1
860
784
-
Arg
CCT
[ENA]
¡û
Identical group No.417053 (1 seq.)
>ENV09002771
ADGC01023178
Wallaby gut metagenome MeugComb_C1
288
364
+
Arg
CCT
[ENA]
¡û
Identical group No.417063 (1 seq.)
>ENV09002886
ADGC01040669
Wallaby gut metagenome MeugComb_C1
336
260
-
Arg
CCT
[ENA]
¡û
Identical group No.614116 (1 seq.)
>ENV09002712
ADGC01016488
Wallaby gut metagenome MeugComb_C1
633
558
-
Arg
CCT
[ENA]
¡û
Identical group No.680840 (27 seq.)
>WENV180154076
OAUS01009891
[OAUS] human gut metagenome; faeces
1233
1304
+
Arg
CCT
[ENA]
¢þ
>WENV180188043
OAWW01003369
[OAWW] human gut metagenome; faeces
4019
4090
+
Arg
CCT
[ENA]
¢þ
>WENV181338895
OFMF01039727
[OFMF] human gut metagenome; human gut
113
42
-
Arg
CCT
[ENA]
¢þ
>WENV181343095
OFMJ01000454
[OFMJ] human gut metagenome; human gut
15812
15741
-
Arg
CCT
[ENA]
¢þ
>WENV181396714
OFSC01012042
[OFSC] human gut metagenome; human gut
264
193
-
Arg
CCT
[ENA]
¢þ
>WENV182032197
OHCU01000659
[OHCU] human gut metagenome; feces
3457
3384
-
Arg
CCT
[ENA]
¢þ
>WENV182065337
OHFA01002067
[OHFA] human gut metagenome; feces
3900
3973
+
Arg
CCT
[ENA]
¢þ
>WENV182072940
OHFN01005524
[OHFN] human gut metagenome; feces
281
210
-
Arg
CCT
[ENA]
¢þ
>WENV182089991
OHHB01001176
[OHHB] human gut metagenome; feces
2642
2569
-
Arg
CCT
[ENA]
¢þ
>WENV182110272
OHIQ01000778
[OHIQ] human gut metagenome; feces
6259
6332
+
Arg
CCT
[ENA]
¢þ
>WENV182129467
OHJZ01007227
[OHJZ] human gut metagenome; feces
127
200
+
Arg
CCT
[ENA]
¢þ
>WENV182136137
OHKJ01047180
[OHKJ] human gut metagenome; feces
83
10
-
Arg
CCT
[ENA]
¢þ
>WENV182145766
OHKY01005831
[OHKY] human gut metagenome; feces
756
829
+
Arg
CCT
[ENA]
¢þ
>WENV182156688
OHLV01000733
[OHLV] human gut metagenome; feces
1404
1331
-
Arg
CCT
[ENA]
¢þ
>WENV182157509
OHLX01000593
[OHLX] human gut metagenome; feces
1404
1331
-
Arg
CCT
[ENA]
¢þ
>WENV182185187
OHOC01000642
[OHOC] human gut metagenome; feces
2153
2226
+
Arg
CCT
[ENA]
¢þ
>WENV182208403
OHPX01009110
[OHPX] human gut metagenome; feces
1727
1654
-
Arg
CCT
[ENA]
¢þ
>WENV182210204
OHQC01000300
[OHQC] human gut metagenome; feces
2452
2379
-
Arg
CCT
[ENA]
¢þ
>WENV182249196
OHSP01023215
[OHSP] human gut metagenome; feces
443
516
+
Arg
CCT
[ENA]
¢þ
>WENV182250925
OHST01001241
[OHST] human gut metagenome; feces
1727
1800
+
Arg
CCT
[ENA]
¢þ
>WENV182739187
OJQK01013298
[OJQK] human gut metagenome; stool sample
301
230
-
Arg
CCT
[ENA]
¢þ
>WENV182897687
OKSP01002822
[OKSP] human gut metagenome; feces
2280
2353
+
Arg
CCT
[ENA]
¢þ
>WENV183151230
OLOP01066928
[OLOP] human gut metagenome; faeces
242
171
-
Arg
CCT
[ENA]
¢þ
>WENV183470283
OMEJ01012421
[OMEJ] human gut metagenome; feces
103
32
-
Arg
CCT
[ENA]
¢þ
>WENV170088718
CEAE01015872
[CEAE] gut metagenome; human stools
2227
2300
+
Arg
CCT
[ENA]
¢þ
>W1911502714
OEPZ01000002
Bacillota
Dorea phocaeensis Marseille-P4003 [OEPZ]
611838
611765
-
Arg
CCT
[ENA]
¡û
>ENV09002698
ADGC01014550
Wallaby gut metagenome MeugComb_C1
891
818
-
Arg
CCT
[ENA]
¡û
Identical group No.707410 (2 seq.)
>WENV180002641
FLNY01003081
[FLNY] bioreactor metagenome; Moose rumen
10050
10122
+
Arg
CCT
[ENA]
¢þ
>ENV09002878
ADGC01039249
Wallaby gut metagenome MeugComb_C1
353
281
-
Arg
CCT
[ENA]
¡û
Identical group No.752626 (1 seq.)
>ENV09002390
ADGC01000857
Wallaby gut metagenome MeugComb_C1
732
660
-
Arg
CCT
[ENA]
¡û
Identical group No.752632 (2 seq.)
>ENV09002482
ADGC01003157
Wallaby gut metagenome MeugComb_C1
8658
8732
+
Arg
CCT
[ENA]
¡û
>W11155812
AFAK01000343
Gammaproteobacteria
Succinivibrionaceae bacterium WG-1 [AFAK]
4005
4079
+
Arg
CCT
[ENA]
¡û
Identical group No.752633 (1 seq.)
>ENV09002493
ADGC01003275
Wallaby gut metagenome MeugComb_C1
52
126
+
Arg
CCT
[ENA]
¡û
Identical group No.752645 (1 seq.)
>ENV09002663
ADGC01011104
Wallaby gut metagenome MeugComb_C1
14246
14175
-
Arg
CCT
[ENA]
¡û
Identical group No.752649 (1 seq.)
>ENV09002689
ADGC01013600
Wallaby gut metagenome MeugComb_C1
601
675
+
Arg
CCT
[ENA]
¡û
Identical group No.752652 (1 seq.)
>ENV09002715
ADGC01016715
Wallaby gut metagenome MeugComb_C1
295
223
-
Arg
CCT
[ENA]
¡û
Identical group No.752653 (1 seq.)
>ENV09002741
ADGC01019771
Wallaby gut metagenome MeugComb_C1
99
25
-
Arg
CCT
[ENA]
¡û
Identical group No.752654 (1 seq.)
>ENV09002757
ADGC01022179
Wallaby gut metagenome MeugComb_C1
338
266
-
Arg
CCT
[ENA]
¡û
Identical group No.752658 (1 seq.)
>ENV09002787
ADGC01027080
Wallaby gut metagenome MeugComb_C1
344
416
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK