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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wallaby gut metagenome MeugComb_C1
Anticodon = GCA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.417070 (1 seq.)
>ENV09002946
ADGC01051067
Wallaby gut metagenome MeugComb_C1
409
485
+
Cys
GCA
[ENA]
¡û
Identical group No.614089 (1 seq.)
>ENV09002397
ADGC01001030
Wallaby gut metagenome MeugComb_C1
1017
944
-
Cys
GCA
[ENA]
¡û
Identical group No.614115 (1 seq.)
>ENV09002707
ADGC01015794
Wallaby gut metagenome MeugComb_C1
168
243
+
Cys
GCA
[ENA]
¡û
Identical group No.614129 (1 seq.)
>ENV09002785
ADGC01026363
Wallaby gut metagenome MeugComb_C1
445
372
-
Cys
GCA
[ENA]
¡û
Identical group No.614136 (1 seq.)
>ENV09002828
ADGC01030775
Wallaby gut metagenome MeugComb_C1
205
133
-
Cys
GCA
[ENA]
¡û
Identical group No.690186 (5 seq.)
>WENV180002643
FLNY01003097
[FLNY] bioreactor metagenome; Moose rumen
4691
4763
+
Cys
GCA
[ENA]
¢þ
>WENV180002809
FLNY01003989
[FLNY] bioreactor metagenome; Moose rumen
115799
115727
-
Cys
GCA
[ENA]
¢þ
>WENV180657969
OCVV010718944
[OCVV] gut metagenome; gut
175
249
+
Cys
GCA
[ENA]
¢þ
>WENV180657970
OCVV010718944
[OCVV] gut metagenome; gut
175
249
+
Cys
GCA
[ENA]
¢þ
>ENV09002611
ADGC01009214
Wallaby gut metagenome MeugComb_C1
1984
2056
+
Cys
GCA
[ENA]
¡û
Identical group No.752630 (1 seq.)
>ENV09002462
ADGC01002722
Wallaby gut metagenome MeugComb_C1
114
40
-
Cys
GCA
[ENA]
¡û
Identical group No.752656 (1 seq.)
>ENV09002781
ADGC01025357
Wallaby gut metagenome MeugComb_C1
376
450
+
Cys
GCA
[ENA]
¡û
Identical group No.752661 (1 seq.)
>ENV09002820
ADGC01030348
Wallaby gut metagenome MeugComb_C1
418
492
+
Cys
GCA
[ENA]
¡û
Identical group No.752673 (1 seq.)
>ENV09002951
ADGC01051450
Wallaby gut metagenome MeugComb_C1
210
284
+
Cys
GCA
[ENA]
¡û
Identical group No.780647 (25 seq.)
>W131232217
AUJB01000009
Bacillota
Pseudobutyrivibrio ruminis CF1b [AUJB]
29641
29570
-
Cys
GCA
[ENA]
¡û
>W131232941
AUJQ01000009
Bacillota
Pseudobutyrivibrio ruminis AD2017 [AUJQ]
29500
29427
-
Cys
GCA
[ENA]
¡û
>WENV180002422
FLNY01001869
[FLNY] bioreactor metagenome; Moose rumen
239
168
-
Cys
GCA
[ENA]
¢þ
>WENV180002424
FLNY01001870
[FLNY] bioreactor metagenome; Moose rumen
239
168
-
Cys
GCA
[ENA]
¢þ
>WENV180002790
FLNY01003891
[FLNY] bioreactor metagenome; Moose rumen
4559
4630
+
Cys
GCA
[ENA]
¢þ
>WENV180679719
OCVV012348701
[OCVV] gut metagenome; gut
29
100
+
Cys
GCA
[ENA]
¢þ
>WENV180679720
OCVV012348701
[OCVV] gut metagenome; gut
29
100
+
Cys
GCA
[ENA]
¢þ
>W141559919
JHXE01000001
Bacillota
Pseudobutyrivibrio sp. MD2005 [JHXE]
30112
30041
-
Cys
GCA
[ENA]
¡û
>W141732124
JNJS01000006
Bacillota
Pseudobutyrivibrio sp. LB2011 [JNJS]
210106
210179
+
Cys
GCA
[ENA]
¡û
>W141734035
JNLH01000001
Bacillota
Pseudobutyrivibrio ruminis HUN009 [JNLH]
834223
834296
+
Cys
GCA
[ENA]
¡û
>W1911495262
OBMR01000009
Bacillota
Pseudobutyrivibrio ruminis DSM 9787 [OBMR]
98466
98537
+
Cys
GCA
[ENA]
¡û
>W1810066731
PDYF01000009
Bacillota
Pseudobutyrivibrio ruminis JK626 [PDYF]
37764
37693
-
Cys
GCA
[ENA]
¡û
>W1810066815
PDYH01000017
Bacillota
Pseudobutyrivibrio ruminis JK10 [PDYH]
37682
37611
-
Cys
GCA
[ENA]
¡û
>ENV09002624
ADGC01009661
Wallaby gut metagenome MeugComb_C1
2606
2535
-
Cys
GCA
[ENA]
¡û
>C11102869
FP929036
Bacillota
Butyrivibrio fibrisolvens 16/4 [FP929036]
2791904
2791975
+
Cys
GCA
[Ensembl]
¡û
>W1710507040
FMUY01000006
Bacillota
Pseudobutyrivibrio sp. AR14 [FMUY]
186479
186552
+
Cys
GCA
[ENA]
¡û
>W1710508786
FMWK01000015
Bacillota
Pseudobutyrivibrio xylanivorans [FMWK]
29531
29460
-
Cys
GCA
[ENA]
¡û
>W1710517802
FNDP01000003
Bacillota
Pseudobutyrivibrio sp. 49 [FNDP]
29440
29369
-
Cys
GCA
[ENA]
¡û
>W1710543372
FNZX01000010
Bacillota
Pseudobutyrivibrio ruminis [FNZX]
37637
37564
-
Cys
GCA
[ENA]
¡û
>W1710553002
FOHF01000007
Bacillota
Pseudobutyrivibrio sp. C4 [FOHF]
34300
34227
-
Cys
GCA
[ENA]
¡û
>W1710564084
FOQF01000009
Bacillota
Pseudobutyrivibrio sp. OR37 [FOQF]
29416
29343
-
Cys
GCA
[ENA]
¡û
>W1710571099
FOVQ01000003
Bacillota
Pseudobutyrivibrio sp. UC1225 [FOVQ]
29707
29636
-
Cys
GCA
[ENA]
¡û
>W1710571611
FOWB01000013
Bacillota
Pseudobutyrivibrio sp. JW11 [FOWB]
48647
48720
+
Cys
GCA
[ENA]
¡û
>W1710575292
FOZB01000002
Bacillota
Pseudobutyrivibrio sp. NOR37 [FOZB]
530062
530135
+
Cys
GCA
[ENA]
¡û
>W1710587597
FQYQ01000019
Bacillota
Pseudobutyrivibrio xylanivorans DSM 14809 [FQYQ]
29680
29751
+
Cys
GCA
[ENA]
¡û
Identical group No.782466 (71 seq.)
>WENV180156672
OAUV01084523
[OAUV] human gut metagenome; faeces
100
171
+
Cys
GCA
[ENA]
¢þ
>WENV180303418
OBJF01039643
[OBJF] human gut metagenome; feces
830
759
-
Cys
GCA
[ENA]
¢þ
>WENV180522639
OCHG01001060
[OCHG] human gut metagenome; human gut
19516
19445
-
Cys
GCA
[ENA]
¢þ
>WENV180533393
OCHL01068834
[OCHL] human gut metagenome; human gut
506
435
-
Cys
GCA
[ENA]
¢þ
>WENV180611000
OCPW01003857
[OCPW] human gut metagenome; human gut
5249
5178
-
Cys
GCA
[ENA]
¢þ
>WENV180761281
ODHZ01007679
[ODHZ] human metagenome; G_DNA_Stool
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV180837642
ODKG01005452
[ODKG] human metagenome; G_DNA_Stool
6493
6422
-
Cys
GCA
[ENA]
¢þ
>WENV180963580
ODUN01263321
[ODUN] human metagenome; G_DNA_Stool
255
184
-
Cys
GCA
[ENA]
¢þ
>WENV181337386
OFME01002744
[OFME] human gut metagenome; human gut
6274
6203
-
Cys
GCA
[ENA]
¢þ
>WENV181339904
OFMG01002837
[OFMG] human gut metagenome; human gut
482
553
+
Cys
GCA
[ENA]
¢þ
>WENV181344422
OFMK01000612
[OFMK] human gut metagenome; human gut
35044
34973
-
Cys
GCA
[ENA]
¢þ
>WENV181357789
OFMU01091817
[OFMU] human gut metagenome; human gut
7
78
+
Cys
GCA
[ENA]
¢þ
>WENV181395177
OFRZ01009299
[OFRZ] human gut metagenome; human gut
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV181396536
OFSC01004101
[OFSC] human gut metagenome; human gut
143
214
+
Cys
GCA
[ENA]
¢þ
>WENV181397852
OFSD01008528
[OFSD] human gut metagenome; human gut
78
149
+
Cys
GCA
[ENA]
¢þ
>WENV181420382
OGCN01002203
[OGCN] human gut metagenome; human gut
21781
21710
-
Cys
GCA
[ENA]
¢þ
>WENV181422954
OGCO01003585
[OGCO] human gut metagenome; human gut
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV181435797
OGDF01006395
[OGDF] human gut metagenome; human gut
146
217
+
Cys
GCA
[ENA]
¢þ
>WENV181441000
OGDN01003139
[OGDN] human gut metagenome; human gut
18364
18293
-
Cys
GCA
[ENA]
¢þ
>WENV181456505
OGEG01019005
[OGEG] metagenome; Human gut stool
875
804
-
Cys
GCA
[ENA]
¢þ
>WENV181505336
OGGK01011107
[OGGK] metagenome; Human gut stool
87
158
+
Cys
GCA
[ENA]
¢þ
>WENV181633129
OGMU01011501
[OGMU] metagenome; Human gut stool
1233
1162
-
Cys
GCA
[ENA]
¢þ
>WENV181733871
OGQE01018557
[OGQE] human gut metagenome; faeces
1344
1273
-
Cys
GCA
[ENA]
¢þ
>WENV181745497
OGQM01039788
[OGQM] human gut metagenome; faeces
39
110
+
Cys
GCA
[ENA]
¢þ
>WENV181902269
OGXW01017322
[OGXW] human gut metagenome; faeces
2558
2487
-
Cys
GCA
[ENA]
¢þ
>WENV181916995
OGYG01001404
[OGYG] human gut metagenome; faeces
144
215
+
Cys
GCA
[ENA]
¢þ
>WENV181964811
OGZR01015620
[OGZR] human gut metagenome; faeces
1043
972
-
Cys
GCA
[ENA]
¢þ
>WENV181967635
OGZV01011759
[OGZV] human gut metagenome; faeces
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV181975254
OHAC01002779
[OHAC] human gut metagenome; faeces
547
618
+
Cys
GCA
[ENA]
¢þ
>WENV181994188
OHAS01014396
[OHAS] human gut metagenome; faeces
3011
2940
-
Cys
GCA
[ENA]
¢þ
>WENV181998303
OHAU01049295
[OHAU] human gut metagenome; faeces
233
304
+
Cys
GCA
[ENA]
¢þ
>WENV182303352
OHWU01018621
[OHWU] human gut metagenome; feces
538
467
-
Cys
GCA
[ENA]
¢þ
>WENV182321236
OHYL01002815
[OHYL] human gut metagenome; feces
3107
3036
-
Cys
GCA
[ENA]
¢þ
>WENV182323559
OHYP01026646
[OHYP] human gut metagenome; feces
13
84
+
Cys
GCA
[ENA]
¢þ
>WENV182370203
OICS01011348
[OICS] human gut metagenome; feces
640
569
-
Cys
GCA
[ENA]
¢þ
>WENV182510795
OIWK01005804
[OIWK] human gut metagenome; faeces
4769
4698
-
Cys
GCA
[ENA]
¢þ
>WENV183047328
OLGF01004180
[OLGF] human gut metagenome; faeces
321
392
+
Cys
GCA
[ENA]
¢þ
>WENV183094135
OLNC01000729
[OLNC] human gut metagenome; faeces
26563
26492
-
Cys
GCA
[ENA]
¢þ
>WENV183102620
OLNI01001579
[OLNI] human gut metagenome; faeces
11350
11279
-
Cys
GCA
[ENA]
¢þ
>WENV183149685
OLOO01014763
[OLOO] human gut metagenome; faeces
1995
1924
-
Cys
GCA
[ENA]
¢þ
>WENV183171118
OLPB01016808
[OLPB] human gut metagenome; faeces
837
766
-
Cys
GCA
[ENA]
¢þ
>WENV183177799
OLPG01005335
[OLPG] human gut metagenome; faeces
231
302
+
Cys
GCA
[ENA]
¢þ
>WENV183185771
OLPN01031631
[OLPN] human gut metagenome; faeces
82
153
+
Cys
GCA
[ENA]
¢þ
>WENV183187615
OLPO01037743
[OLPO] human gut metagenome; faeces
53
124
+
Cys
GCA
[ENA]
¢þ
>WENV183194692
OLPT01000215
[OLPT] human gut metagenome; faeces
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV183201136
OLPW01012654
[OLPW] human gut metagenome; faeces
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV183220044
OLQK01006038
[OLQK] human gut metagenome; faeces
3753
3682
-
Cys
GCA
[ENA]
¢þ
>WENV183223925
OLQN01000308
[OLQN] human gut metagenome; faeces
44698
44627
-
Cys
GCA
[ENA]
¢þ
>WENV183228095
OLQQ01029060
[OLQQ] human gut metagenome; faeces
29
100
+
Cys
GCA
[ENA]
¢þ
>WENV183238394
OLQY01038619
[OLQY] human gut metagenome; faeces
611
540
-
Cys
GCA
[ENA]
¢þ
>WENV183250969
OLRH01010620
[OLRH] human gut metagenome; faeces
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV183263021
OLRQ01033338
[OLRQ] human gut metagenome; faeces
762
691
-
Cys
GCA
[ENA]
¢þ
>WENV183273308
OLRX01004988
[OLRX] human gut metagenome; faeces
6272
6201
-
Cys
GCA
[ENA]
¢þ
>WENV183282845
OLSC01036834
[OLSC] human gut metagenome; faeces
44
115
+
Cys
GCA
[ENA]
¢þ
>WENV183295930
OLSL01006237
[OLSL] human gut metagenome; faeces
140
211
+
Cys
GCA
[ENA]
¢þ
>WENV183301122
OLSO01016285
[OLSO] human gut metagenome; faeces
78
149
+
Cys
GCA
[ENA]
¢þ
>WENV183352558
OLWZ01043295
[OLWZ] human gut metagenome; feces
583
512
-
Cys
GCA
[ENA]
¢þ
>WENV183356541
OLXE01021431
[OLXE] human gut metagenome; feces
859
788
-
Cys
GCA
[ENA]
¢þ
>WENV183392627
OLZE01030721
[OLZE] human gut metagenome; feces
715
644
-
Cys
GCA
[ENA]
¢þ
>WENV183472394
OMEQ01005397
[OMEQ] human gut metagenome; feces
3305
3234
-
Cys
GCA
[ENA]
¢þ
>W141559051
JHWK01000011
Bacillota
Lachnospiraceae bacterium MD2004 [JHWK]
47694
47621
-
Cys
GCA
[ENA]
¡û
>W141730682
JNIN01000001
Bacillota
Lachnospiraceae bacterium AC2012 [JNIN]
1615575
1615502
-
Cys
GCA
[ENA]
¡û
>W141733364
JNKT01000010
Bacillota
Lachnospiraceae bacterium FD2005 [JNKT]
552
625
+
Cys
GCA
[ENA]
¡û
>W1910575215
JRFU01000142
Bacillota
Eubacterium ramulus 21 [JRFU]
142
213
+
Cys
GCA
[ENA]
¡û
>W1810883590
QULX01000016
Bacillota
Roseburia sp. OM02-15 [QULX]
3387
3458
+
Cys
GCA
[ENA]
¡û
>ENV09002627
ADGC01009662
Wallaby gut metagenome MeugComb_C1
646
573
-
Cys
GCA
[ENA]
¡û
>W1511578823
LARB01000224
Bacillota
Ruminococcus sp. A254.MGS-254 [LARB]
869
940
+
Cys
GCA
[ENA]
¡û
>W1610098814
CYYA01000056
Bacillota
Eubacterium ramulus [CYYA]
175
246
+
Cys
GCA
[ENA]
¡û
>WENV083125
BAAX01002922
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
2092
2165
+
Cys
GCA
[ENA]
>W1710101569
CYYA01000056
Bacillota
Eubacterium ramulus [CYYA]
175
246
+
Cys
GCA
[ENA]
¡û
>W1710541721
FNYN01000008
Bacillota
Lachnospiraceae bacterium A10 [FNYN]
47411
47338
-
Cys
GCA
[ENA]
¡û
Identical group No.783648 (16 seq.)
>WENV180719820
ODGJ01006415
[ODGJ] human metagenome; G_DNA_Tongue dorsum
401
472
+
Cys
GCA
[ENA]
¢þ
>WENV180763914
ODIA01008930
[ODIA] human metagenome; G_DNA_Tongue dorsum
394
465
+
Cys
GCA
[ENA]
¢þ
>WENV180774538
ODIJ01032550
[ODIJ] human metagenome; G_DNA_Tongue dorsum
395
466
+
Cys
GCA
[ENA]
¢þ
>WENV180820493
ODJR01009093
[ODJR] human metagenome; G_DNA_Tongue dorsum
402
473
+
Cys
GCA
[ENA]
¢þ
>WENV180855129
ODKX01035177
[ODKX] human metagenome; G_DNA_Tongue dorsum
390
461
+
Cys
GCA
[ENA]
¢þ
>WENV180884239
ODMC01065842
[ODMC] human metagenome; G_DNA_Tongue dorsum
396
467
+
Cys
GCA
[ENA]
¢þ
>WENV180897285
ODNI01013156
[ODNI] human metagenome; G_DNA_Tongue dorsum
65
136
+
Cys
GCA
[ENA]
¢þ
>WENV180920939
ODTH01045209
[ODTH] human metagenome; G_DNA_Tongue dorsum
350
421
+
Cys
GCA
[ENA]
¢þ
>WENV181014648
ODWN01134938
[ODWN] human metagenome; G_DNA_Tongue dorsum
31
102
+
Cys
GCA
[ENA]
¢þ
>WENV181021887
ODWV01069587
[ODWV] human metagenome; G_DNA_Tongue dorsum
292
221
-
Cys
GCA
[ENA]
¢þ
>WENV181038533
ODXQ01002007
[ODXQ] human metagenome; G_DNA_Tongue dorsum
3790
3861
+
Cys
GCA
[ENA]
¢þ
>WENV181095623
OEBY01014153
[OEBY] human metagenome; G_DNA_Tongue dorsum
2039
1968
-
Cys
GCA
[ENA]
¢þ
>WENV181113481
OEEL01031732
[OEEL] human metagenome; G_DNA_Tongue dorsum
117
188
+
Cys
GCA
[ENA]
¢þ
>WENV170657797
JTFP01020803
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
146
75
-
Cys
GCA
[ENA]
¢þ
>WENV170670116
LAHS01048586
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
262
189
-
Cys
GCA
[ENA]
¢þ
>ENV09002728
ADGC01018518
Wallaby gut metagenome MeugComb_C1
22
93
+
Cys
GCA
[ENA]
¡û
Identical group No.824525 (1 seq.)
>ENV09002667
ADGC01011337
Wallaby gut metagenome MeugComb_C1
1409
1336
-
Cys
GCA
[ENA]
¡û
Identical group No.824527 (1 seq.)
>ENV09002706
ADGC01015784
Wallaby gut metagenome MeugComb_C1
468
397
-
Pseudo
GCA
[ENA]
¡û
Identical group No.824532 (1 seq.)
>ENV09002870
ADGC01037953
Wallaby gut metagenome MeugComb_C1
270
199
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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