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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
Anticodon = ACG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.282504 (7 seq.)
>W141426854
JEMZ01000121
Betaproteobacteria
Candidatus Accumulibacter sp. BA-94 [JEMZ]
7014
6938
-
Arg
ACG
[ENA]
¡û
>W141451274
JFAW01000016
Betaproteobacteria
Candidatus Accumulibacter sp. SK-11 [JFAW]
46484
46560
+
Arg
ACG
[ENA]
¡û
>W141451292
JFAX01000002
Betaproteobacteria
Candidatus Accumulibacter adjunctus sp. SK-12 [JFAX]
100733
100657
-
Arg
ACG
[ENA]
¡û
>C10101118
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4155093
4155169
+
Arg
ACG
[Ensembl]
¡û
>WENV079785
AATN01000698
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
165
89
-
Arg
ACG
[ENA]
>WENV079963
AATO01000024
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
35106
35182
+
Arg
ACG
[ENA]
>WENV080087
AATO01004284
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
879
803
-
Arg
ACG
[ENA]
Identical group No.340666 (4 seq.)
>W131159561
AQVE01000010
Gammaproteobacteria
Thiolinea disciformis DSM 14473 [AQVE]
62360
62284
-
Arg
ACG
[ENA]
¡û
>WENV183718412
PDWJ01003892
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8189
8113
-
Arg
ACG
[ENA]
¢þ
>WENV079846
AATN01002789
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1605
1529
-
Arg
ACG
[ENA]
>W1710602241
FUYB01000002
Gammaproteobacteria
Thiothrix eikelboomii [FUYB]
110458
110382
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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